Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01324 ATGAGAATTTCGGGAATTCAGCGCGGCAAGCACAACCCTTCTTCCTCGTCTTCGCTTCCATGGATATCTCCGCTCAATTTCACAAAACCCAAACCCGAGCCTCCTCCCCAACCCACCGCCGAGCCTCCGCGGAAGCGCAGCTACATTTCCCACGACTCCGCCATCGACATGATCAAACGCCAGAAAAATCCACAAGAGGCCTTACAAATATTCAACACCGTTTCGCAACAGAAGGGTTTCAACCACAACAACGCCACCTACGCCACCATCCTCCAGAGCCTCGCGCGCCGCGACCAGTTCCACGCCGTCAACCGCGTGCTCCACCAAATGACCTACGAAACCTGCAAGTTCCACGAGGGCATTTTCGTCAACCTCATGAAGCACTTCTCCAGGGCCTCCCTCCATGAAAACGTTCTCCAAGCCTTCTTCTCCATTCAACCCATCGTTAGGGAAAAACCCTCCCCCAAAGCCCTCGCCACGTGTCTCGACCTCTTGCTCCATTCCGATCGCCTCGATTTGGCGCGGAATTTGCTCCTGCATGCCAAACGCACCCTCACGCATAAGCCCAATGTTTGCGTCTTTAATATCCTCGTTAAGTACCATTGCAAAAAAGGGGATCTTGAATCTGCTTTTCACGTTGTTAAGGAAATGAGGAATTCGGTGCTGTCTTACCCTAATTTGGTTACTTACTCCACCCTCATGGACGGCCTTTGTAAAATTGGAAGACTCAAAGAAGCCTTTCAGGTGTTTGAGGAAATGGTTTCGAGGGATCGCGTTGTGCCTGACCCTCTTACTTACAATACTCTCATCAATGGGTTTTGCCGCGGAGGGGACCCTGAGCGTGCTAGGAATGTGATTCAGTTTATGAAGAGTAATGGGTGTCGTCCCAATCTCTTTAATTACTCTGCTCTGGTCAATGGCTTCTGTAAAGCTGGGAAATTGCAGGATGCGAAAGGGGTTTGGGATGAGATGAAGGAATGTGGGTTGAAACCGGATACGGTTACTTACACTTCTTTGATTGATTTTTTGTGTAGGAATGGGGAAACTGGTGAAGCTATGGACTTGCTTGAGGAAATGAAGGAGAATGAGTGCAGGGCTGATACTGTTACGATTAATGTGATACTTGGGGGTTTGTGTAGGGAAGGTAGATTGGAGGAGGCTCTTGATATGCTTGAGAAGCTGCCACACCAGGGTGTGTATTTGAACAAAGCTAGTTACAGGATTGTTCTTAACTCTTTGACCCAGAAATGTGAGTTGGAAAAGGCGAAGGGGTTATTGGGGTTAATGCTGGGTAGGGGGTTTCTGCCACATTATGCAACCTCGAATGAATTGTTGGTTCTTCTTTGTGAGGCAGGAATGGTTGATGCTGCTGCTATGGCACTATTTGACTTGGTGGAGATGGGGTTTCAGCCTGGACTCGAGTCTTGGGAGGTTTTAATTGGGTTAATCTGCAGAGACAGGAAGTTGTTGTATGTTTTTGAGTTACTTGATGAATTAGTGGTCACAAATGCATGA 1515 0.4825 MRISGIQRGKHNPSSSSSLPWISPLNFTKPKPEPPPQPTAEPPRKRSYISHDSAIDMIKRQKNPQEALQIFNTVSQQKGFNHNNATYATILQSLARRDQFHAVNRVLHQMTYETCKFHEGIFVNLMKHFSRASLHENVLQAFFSIQPIVREKPSPKALATCLDLLLHSDRLDLARNLLLHAKRTLTHKPNVCVFNILVKYHCKKGDLESAFHVVKEMRNSVLSYPNLVTYSTLMDGLCKIGRLKEAFQVFEEMVSRDRVVPDPLTYNTLINGFCRGGDPERARNVIQFMKSNGCRPNLFNYSALVNGFCKAGKLQDAKGVWDEMKECGLKPDTVTYTSLIDFLCRNGETGEAMDLLEEMKENECRADTVTINVILGGLCREGRLEEALDMLEKLPHQGVYLNKASYRIVLNSLTQKCELEKAKGLLGLMLGRGFLPHYATSNELLVLLCEAGMVDAAAMALFDLVEMGFQPGLESWEVLIGLICRDRKLLYVFELLDELVVTNA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01324 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 220 IPR002885 -
Cca03g01324 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Cca03g01324 504 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 15 502 - -
Cca03g01324 504 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Cca03g01324 504 TIGRFAM PPR: pentatricopeptide repeat domain 265 297 IPR002885 -
Cca03g01324 504 TIGRFAM PPR: pentatricopeptide repeat domain 405 436 IPR002885 -
Cca03g01324 504 TIGRFAM PPR: pentatricopeptide repeat domain 193 220 IPR002885 -
Cca03g01324 504 TIGRFAM PPR: pentatricopeptide repeat domain 228 262 IPR002885 -
Cca03g01324 504 TIGRFAM PPR: pentatricopeptide repeat domain 301 333 IPR002885 -
Cca03g01324 504 TIGRFAM PPR: pentatricopeptide repeat domain 369 402 IPR002885 -
Cca03g01324 504 MobiDBLite consensus disorder prediction 8 24 - -
Cca03g01324 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Cca03g01324 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Cca03g01324 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Cca03g01324 504 Pfam PPR repeat family 225 275 IPR002885 -
Cca03g01324 504 Pfam PPR repeat family 331 380 IPR002885 -
Cca03g01324 504 Gene3D Tetratricopeptide repeat domain 40 150 IPR011990 GO:0005515
Cca03g01324 504 Gene3D Tetratricopeptide repeat domain 151 275 IPR011990 GO:0005515
Cca03g01324 504 Gene3D Tetratricopeptide repeat domain 276 384 IPR011990 GO:0005515
Cca03g01324 504 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 15 502 - -
Cca03g01324 504 MobiDBLite consensus disorder prediction 1 46 - -
Cca03g01324 504 Pfam PPR repeat 292 325 IPR002885 -
Cca03g01324 504 Pfam PPR repeat 187 218 IPR002885 -
Cca03g01324 504 Gene3D Tetratricopeptide repeat domain 396 503 IPR011990 GO:0005515
Cca03g01324 504 Pfam PPR repeat 405 434 IPR002885 -
Cca03g01324 504 MobiDBLite consensus disorder prediction 27 42 - -
Cca03g01324 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Cca03g01324 504 SUPERFAMILY TPR-like 154 358 IPR011990 GO:0005515
Cca03g01324 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01324 Cca-Chr3 31145191 31147128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01324 190 500 Glycosyltransferase AT1G05670 26.367 1.70e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01324 - - gmx:100790966 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01324 03 31145191 31147128 Cca03g01324 03 31145191 31147128 ECH