Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01318 ATGGACTCCGTTCCTTTTCGCGATGGCAACATacactccattctcgactcccgatacctccactctcccctcGAGGTTAATCACAGTTTGCAGGCTCATTCCTCGTTGATTCGGAGGCTTTCTCTGGAGAGGGAGTTAGAGGGCCACCATGGCTGTGTCAATGCGGTGGCTTGGAATTCCAATGGTTCGTTGTTGATATCTGGATCAGATGATACACGGATCAATATTTGGAGCTATTCTGGCCGAAAACTTTTACATTCAATTGACACAGGACATACTGCAAATATATTTTGTACCAAGTTTATACCAGAAACTTCCAATGAGCTTGTAGCTTCTGGAGCTGGAGATGCTGAAGTCCGGTTATTTAATTTATCTCGCTTAAGTGGGGGTGACAATGCCATCATTGCTCCAGCTGCACTTTACCAATGCCACACTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTAGTATGGAGTGCCAGTGAAGATGGGACCGTTAGACAACATGATTTTCGAGAAGGTACCTCTTGTCCTCCAGCTGGATCTTCGCACCAAGAGTGTCGAAATATTCTTCTTGACTTAAGATGTGGAGCTAAAAGGTCACTTGCTGATCCTCCTAAACAAGTCCTTGCTTTAAAATCTTGTGATATCAGTTCAACTAGACCACATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGCTTATATGATAGAAGGATGCTGCCGCCTCTTAGCTCATGCCGGAAAAGAATGTCTCCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATCGTGGACATCCAAGTTTGCACTTGACTCATGTTACATTCAGTCCTGATGGACATGAGGTTCTCCTCAGCTATAGTGGAGAGCATGTTTACTTGATGAATGTAAATTATGCTGGAGTGAATGAAATGCAATATACTTCAGGAGACATATCAAAGCTGATGACTTACTCTCCGACTATTAATGGGACTGAGTTGCAGCCTTGTGTGTCTAATGTTTTCCCAAATGGATTTCCTATAAAAAAGAACATTGCTGCAATGTTTGACAAGTGCAGGAAACTAATAAAATATGCTAAGAAATCATTGGACTCTGGGACACCCTATTATGGAATTGAGGCATGTAATGAGGTTTTGAATGGCTATAGCCATATTATTGGACCTGCACTGAAACATGAATGCTTGTGTACTCGTGCTGCACTACTGATCAAGAGGAAGTGGAAAAATGATGCTCATATGGCTATAAGAGACTGCTATGCTGCCAGGAAAATTGATGATTCCTCCTATAAAGCCCTTTACCATATGTCAGAAGCGTTGTCGCAGTTGGGTAGACATGAAGATGCTTTGGATTTTGCTGTTGCTTCCCATTTGTTGGCCCCTTCCAAATCTGAACTTGCAGAAAGAGTGGAAAATGTGAAGAAGGATATTGCTTTAGCTGAAGCTGAAAAAAATAGTAAGACCAATGATGGACCATCAAGGTTTGACAGTCGGGGTGGAAGAATATTATCATTAAGTGACATACTATATCGACATGAGGCCAACGGTGATGCTCCACAAGATGGTCCGAGATCAGAGAGGGATGATTCTGATTACGATGAGGAATTGGAGTTGGACTTTGAAACATCAATATCTGGTGACGAGGGACATGATATTGAATCAAATATTCTTCATGGAAGTTTAAATCTTAGAATTCATAGGAGAGGTGACTCCAGAGACAATTCTGGAGCAAGTGGCTTGTGTGAATCACCATCATCATCACAGAGCAGTAGAACATCTTATCAGCCTGAACCAGCTGTTGATATGAAACAGAGATTTATTGGCCACTGCAATATTGGCACTGACATAAAACAAGCCAGTTTTCTTGGTCAAAGAGGTGAATATGTTGCCACTGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGTACTGGTAGACTCATAAAAATGCTGAACGGGGATGAATCTGTTGTAAATTGTGTACAATGCCATCCATTTGATTTTGTTGTTGCAACCAGTGGGATTGATAGCACAATAAAGATATGGACTCCAAGTGCTCCTGTTGCATCTTCTGTAGCTGGTGGTTCAGCATGA 2121 0.4107 MDSVPFRDGNIHSILDSRYLHSPLEVNHSLQAHSSLIRRLSLERELEGHHGCVNAVAWNSNGSLLISGSDDTRINIWSYSGRKLLHSIDTGHTANIFCTKFIPETSNELVASGAGDAEVRLFNLSRLSGGDNAIIAPAALYQCHTRRVKKLAVENGNPNVVWSASEDGTVRQHDFREGTSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNYAGVNEMQYTSGDISKLMTYSPTINGTELQPCVSNVFPNGFPIKKNIAAMFDKCRKLIKYAKKSLDSGTPYYGIEACNEVLNGYSHIIGPALKHECLCTRAALLIKRKWKNDAHMAIRDCYAARKIDDSSYKALYHMSEALSQLGRHEDALDFAVASHLLAPSKSELAERVENVKKDIALAEAEKNSKTNDGPSRFDSRGGRILSLSDILYRHEANGDAPQDGPRSERDDSDYDEELELDFETSISGDEGHDIESNILHGSLNLRIHRRGDSRDNSGASGLCESPSSSQSSRTSYQPEPAVDMKQRFIGHCNIGTDIKQASFLGQRGEYVATGSDDGRWFIWEKRTGRLIKMLNGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPSAPVASSVAGGSA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01318 706 SUPERFAMILY WD40 repeat-like 38 691 IPR036322 GO:0005515
Cca03g01318 706 Coils Coil 471 498 - -
Cca03g01318 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Cca03g01318 706 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 23 702 - -
Cca03g01318 706 SMART WD40_4 134 174 IPR001680 GO:0005515
Cca03g01318 706 SMART WD40_4 81 123 IPR001680 GO:0005515
Cca03g01318 706 SMART WD40_4 607 650 IPR001680 GO:0005515
Cca03g01318 706 SMART WD40_4 263 305 IPR001680 GO:0005515
Cca03g01318 706 SMART WD40_4 209 242 IPR001680 GO:0005515
Cca03g01318 706 SMART WD40_4 653 692 IPR001680 GO:0005515
Cca03g01318 706 SMART WD40_4 39 78 IPR001680 GO:0005515
Cca03g01318 706 MobiDBLite consensus disorder prediction 584 605 - -
Cca03g01318 706 MobiDBLite consensus disorder prediction 575 605 - -
Cca03g01318 706 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Cca03g01318 706 Gene3D Tetratricopeptide repeat domain 351 485 IPR011990 GO:0005515
Cca03g01318 706 Pfam WD domain, G-beta repeat 656 691 IPR001680 GO:0005515
Cca03g01318 706 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515
Cca03g01318 706 MobiDBLite consensus disorder prediction 521 540 - -
Cca03g01318 706 Gene3D - 567 697 IPR015943 GO:0005515
Cca03g01318 706 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 23 702 IPR045151 -
Cca03g01318 706 Gene3D - 29 343 IPR015943 GO:0005515
Cca03g01318 706 SUPERFAMILY TPR-like 400 472 IPR011990 GO:0005515
Cca03g01318 706 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 691 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01318 Cca-Chr3 30989972 30999309 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01318 K11807 - gmx:100793917 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01318 03 30989972 30999309 Cca03g01318 03 30989972 30999309 ECH