Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01314 ATGAGCGGTGACGcccaaccccaaaccaccgacaccaaaccagaccaaacccaaaacaccaacatcaaacATGAAGAAcctcaagcccaggctcaggctcaagctcaggctcagcctccgcctcagtctcaCTCCACTGATTTTGCTCCATACCCTAAACTGGACCCCAACGATGTGGTGCCACCTCTGAACACTGATTCTCGCGCCCCTATTTCCGGCGATGCTGCCACTACCATGCCCAAAGACTCCAATCCCTATGTCACTCCTGCGCCCGTTGCCACTTCATCTACTAAGACTACTTTAGATTCGGTGAAAGACGTTCTCGGAAAATGGGGGAAGAAAGCCGCCGAGGCCACCAAGAAGGCCGAGGATCTCGCCGGCAATATGTGGCAGCACTTGAAAACGGGTCCGAGTTTTGCGGATGCTGCTGTGGGGAGGATTGCTCAGGGAACTAAGGTTCTTGCGGAAGGAGGGTATGAGAAGATCTTTAGGCAAACGTTTGAGACGGTTCCAGAGGAGCAGCTTCTGAAAACCTATGCATGCTACTTGTCCACCTCCGCTGGACCTGTCATGGGAGTCTTGTATTTGTCAACGGCTAAGTTGGCGTTTTGTAGTGATAACCCGCTTTCTTACCAAGTGGGTGAACAGACTCAATGGAGCTATTATAAGGTGGTGATTCCATTGCACCAGCTGAGAGCAGTAAACGCCTCAACAAGTAGAACCAACGCATCTGAAAAATATATACAGATTATCTCTGTTGACAACCATGAATTCTGGTTTATGGGCTTTGTGCACTACGACAGTGCTGTTAAAAATATTCAAGGAGCATTGCAGCCTCACTGA 843 0.4259 MSGDAQPQTTDTKPDQTQNTNIKHEEPQAQAQAQAQAQPPPQSHSTDFAPYPKLDPNDVVPPLNTDSRAPISGDAATTMPKDSNPYVTPAPVATSSTKTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGEQTQWSYYKVVIPLHQLRAVNASTSRTNASEKYIQIISVDNHEFWFMGFVHYDSAVKNIQGALQPH 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01314 280 Gene3D - 159 278 IPR011993 -
Cca03g01314 280 MobiDBLite consensus disorder prediction 1 94 - -
Cca03g01314 280 Pfam GRAM domain 162 278 IPR004182 -
Cca03g01314 280 PANTHER GEM-LIKE PROTEIN 1 34 279 - -
Cca03g01314 280 MobiDBLite consensus disorder prediction 1 44 - -
Cca03g01314 280 MobiDBLite consensus disorder prediction 77 94 - -
Cca03g01314 280 CDD PH-GRAM_GEM 172 278 - -
Cca03g01314 280 PANTHER GEM-LIKE PROTEIN 2 34 279 IPR037848 -
Cca03g01314 280 SMART gram2001c 161 238 IPR004182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01314 Cca-Chr3 30900725 30905477 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01314 - - gmx:100775667 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01314 03 30900725 30905477 Cca03g01314 03 30900725 30905477 ECH