Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01313 ATGAATAAAATGGAGGGCCAAGCACCGTCCCCTCTGCCGGACCAGGTCCTGGAAAACGTCCTGGAAACGGTCCTCCACTTCCTGAGCTCCCGGCGCGACCGCAACGCCGCCTCATTGGTCTGCAAATCATGGTACCGTGCGGAGGCCCTGACCCGATCCGAGCTCTTCATCGGCAACTGCTACGCGGTCTCCCCACGGCGGGCCACAGCCCGGTTCCCCCGGGTGCGGTCCCTGACGATCAAGGGGAAGCCCAGGTTCGCGGACTTCGATCTGATGCCCCTGAACTGGGGGGCCCACTTCACCCCCTGGGCCCAGGCCTTGGCCCAATCGTACCCCTCCCTCCGGCGTCTCCACCTGAAACGCATGTCCCTCACCGACCGCGACctcaccctcctctccctctccttcccccacttccAAGACCTCCTCCTCACTTGCTGCGAAGCCTTCACCACCACCGGCCTCGCCGCCATCGCCGCCAACTGCAGGCTCCTGAGAGTGCTTGATCTCGCCGAATGCGTCGTCGAGGTTGCCGACGAGGAAGTGGATTGGATTTCGTCTTTTCCGGAGACTCAGGAGGAGACTCATTTGGAGTCTCTTGTTTTTGACTGCGTCGAGTGTCCCGTCAATTTCCAAGCTTTGGAGAGGCTCGTGGCGCGCTCTCCCTCGCTCAGGAAGCTCAGGTTGAACCGTTACGTTTCCATGTCGCAGCTGCACCGTTTGATGCATCGCGCGCCGCAGCTCACGCATCTTGGAACCGGTTCCTTCAGTGCTTCCGAACTGGATCCCGAACCGGATTACGCCTCTGCGTTTGCGGCTTCCAAATCCTTGGTTTGTTTGTCTGGCTTCAGGGAGATTTGGCCGGATTATCTTCCTGCTATTTATCCAGCTTGTGCTAATCTTACATCCTTGAATTTTAGTTACGCTGATATCAATGCACATCAGCTCAAATCGGTTATACGTCACTGTCATAAGCTGCAAACGTTTTGGGTCCTTGATTCGATATCGGATGAAGGGCTTCAAGCAGTGGCTGAGACTTGCAAGGATTTGCGAGAGCTTCGGGTTTTCCCTGTCAATACCAGGGAGGAGATAGAAGGTCCTGTGTCCGAGGTGGGATTTGAGGCGATTTCTCGAGGCTGTAGGAAACTGCAGTCAATCCTGTTTTTCTGCCAGAGGATGACGAATGCAGCTGTGGTGGCCATGTCGAACAACTGCCCGGATCTTGTGGTGTTTCGGTTGTGTATAATTGGGCAGTATCGGCCGGATCCTGAGACACTGGAACCCATGGATGAAGGTTTTGGTGCCATTGTTATGAACTGCAAGAAGCTCACTCGGCTTGCTGTGTCTGGTTTACTGACTGATCGAGCTTTTGGTTACATTGGGACATATGGGAAGTTGATTAGGACGCTGTCGGTTGCCTTTGCTGGAGACACTGATCTGGGGCTCAAATATGTGCTAGAAGGATGTCCTAATCTGCAGAAGCTTGAAATTAGGGACAGTCCATTTGGGGATGGAGCTTTGCGTTCTGGCTTGCATCATTTTTACAACATGAGGTTCCTCTGGATGTCCTCATGCAAGTTGACGCGCCAAGCTTGCCAAGAAGTTGCACGAAGGTTGCCCCATCTGGTGTTGGAAGTCATTAACAGTGAAGAGGGTAAAGCTGATGATATTGAGATTCTGTACATGTATCGGTCTCTGGACAGACCAAGGGATGATGCTCCGAAAGTTGTTACTATCCTTCATTGA 1746 0.5269 MNKMEGQAPSPLPDQVLENVLETVLHFLSSRRDRNAASLVCKSWYRAEALTRSELFIGNCYAVSPRRATARFPRVRSLTIKGKPRFADFDLMPLNWGAHFTPWAQALAQSYPSLRRLHLKRMSLTDRDLTLLSLSFPHFQDLLLTCCEAFTTTGLAAIAANCRLLRVLDLAECVVEVADEEVDWISSFPETQEETHLESLVFDCVECPVNFQALERLVARSPSLRKLRLNRYVSMSQLHRLMHRAPQLTHLGTGSFSASELDPEPDYASAFAASKSLVCLSGFREIWPDYLPAIYPACANLTSLNFSYADINAHQLKSVIRHCHKLQTFWVLDSISDEGLQAVAETCKDLRELRVFPVNTREEIEGPVSEVGFEAISRGCRKLQSILFFCQRMTNAAVVAMSNNCPDLVVFRLCIIGQYRPDPETLEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFGYIGTYGKLIRTLSVAFAGDTDLGLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHHFYNMRFLWMSSCKLTRQACQEVARRLPHLVLEVINSEEGKADDIEILYMYRSLDRPRDDAPKVVTILH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01313 581 Gene3D Ribonuclease Inhibitor 54 580 IPR032675 -
Cca03g01313 581 SUPERFAMILY RNI-like 41 543 - -
Cca03g01313 581 Pfam Transport inhibitor response 1 protein domain 73 119 IPR041101 -
Cca03g01313 581 SUPERFAMILY F-box domain 10 47 IPR036047 GO:0005515
Cca03g01313 581 SMART LRR_CC_2 323 346 IPR006553 -
Cca03g01313 581 SMART LRR_CC_2 380 404 IPR006553 -
Cca03g01313 581 SMART LRR_CC_2 489 513 IPR006553 -
Cca03g01313 581 SMART LRR_CC_2 440 463 IPR006553 -
Cca03g01313 581 SMART LRR_CC_2 136 161 IPR006553 -
Cca03g01313 581 SMART LRR_CC_2 111 135 IPR006553 -
Cca03g01313 581 Gene3D - 3 52 - -
Cca03g01313 581 Pfam F-box 14 53 IPR041567 -
Cca03g01313 581 PANTHER F-BOX PROTEIN FBX14 8 579 - -
Cca03g01313 581 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 8 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01313 Cca-Chr3 30898211 30900285 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01313 - - gmx:100799915 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01313 03 30898211 30900285 Cca03g01313 03 30898211 30900285 ECH