Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01312 ATGCGTTCATTGGTGGCCAAGGGAAGAATCAGGAGCATGAAATGTCTATGCCTTACACACACACTCACTCAAACCCATAAAACTCCACACGTCACCACCTTCCCTCATTCTCTCCATATTAATCATAATCCCCTCTTTCAAGTCTTCTCCGGTTTTCTCCGACTTCCAATTCGGCCGTTTTCTACCAAGTTCAAGGGTGGCCCCACACCGACCGCTTCTTCTTCTTCTTGTGCGTTGGCCCAAAGCATGGCGAATTTCGACGCTGATTCCGTCACTTACTTAACGCAGCGAGAAGCCGCCGAGATCGACGAGACACTCATGGGTCCTCTTGGCTTCAGCGTCGACCAGCTCATGGAATTGGCTGGTTTAAGTGTCGCTGCTTCCATTTCTGAGGTTTACAAACCGAGTGAGTATAATCGTGTTCTTACTATATGTGGTCCTGGTAACAATGGGGGTGATGGTCTGGTAGCTGCTCGGCACTTGCATCACTTTGGGTATAAGCCCTTCGTCTGTTACCCGAAGCGTACCCCCAAGCCTCTCTATGCTGGATTAGTTACTCAGCTTGAAGCACTGTCAATCCCATTCTTGTCGGTGGAAGAACTACCGTCAGATATTTCAAATGACTTTGACATTCTCATAGATGCCATGTTTGGATTCTCATTTCATGGTTCTCCAAGGCCTCCTTTTGATGATTTGATCCAGAGACTTGTCTCTTTACATAGTCATAATCAAATTGGCCCGAAAAGATCAGTTATAGTCTCTGTAGATATACCTTCTGGGTGGCATGTTGAAGAGGGAGACGTTGATGGTTCAGGCATTAAACCTGATATGTTGGTTTCGTTGACAGCCCCAAAATTAGGTGCAAAGAAGTTTGGTGGTCCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCTGCAATTGCAGAAAAATATAAGCTTATACTTCCAGCATATCCTGGAACATCCATGTGTGTTAGAATTGGAAAGCCTCCACAAATTGATATCTCGGCTCTAAGAGAGAACTATATCTCTCCAGAATTTCTTGAAGACCAGGTGGAGGCTGACCCTATTAATCAGTTTCGCAATTGGTTTGATGATGCATTAGCTGCTGGTTTGAAGGAACCAAATGCTATGGCCTTGTCTACTGTAGGGAAGGATGGAAAACCCTCATCACGAATGGTATTGCTGAAAGGCTTGGATAAGGATGGATTTGTGTGGTACACAAACTATGAAAGTCGAAAGGGACATGAATTATCTGAAAATCCACGTGCATCACTTCTTTTTTACTGGGATGGTTTAAACCGGCAGGTACGGGTGGAAGGGCCTGTTCAGAAAGTCCCTGATGAAGAATCAGAACAGTATTTCCATAGCCGTCCTAGAGGAAGTCAGATTGGAGCAATAGTCAGCAAGCAGAGTACTGTAGTGCCTGGAAGGCATGTTCTTTATCAGGAGTACAATGAGCTGGAACAAAAATACGCTGATGGTAGTTTGATCCCGAAACCTAAGAACTGGGGAGGATATAGGCTAACACCACAACTTTTCGAATTTTGGCAAGGACAAAAATCTCGCTTGCATGACAGGTGGTTGCTTCCCCGTTTGTGA 1602 0.4519 MRSLVAKGRIRSMKCLCLTHTLTQTHKTPHVTTFPHSLHINHNPLFQVFSGFLRLPIRPFSTKFKGGPTPTASSSSCALAQSMANFDADSVTYLTQREAAEIDETLMGPLGFSVDQLMELAGLSVAASISEVYKPSEYNRVLTICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTPKPLYAGLVTQLEALSIPFLSVEELPSDISNDFDILIDAMFGFSFHGSPRPPFDDLIQRLVSLHSHNQIGPKRSVIVSVDIPSGWHVEEGDVDGSGIKPDMLVSLTAPKLGAKKFGGPHHFLGGRFVPPAIAEKYKLILPAYPGTSMCVRIGKPPQIDISALRENYISPEFLEDQVEADPINQFRNWFDDALAAGLKEPNAMALSTVGKDGKPSSRMVLLKGLDKDGFVWYTNYESRKGHELSENPRASLLFYWDGLNRQVRVEGPVQKVPDEESEQYFHSRPRGSQIGAIVSKQSTVVPGRHVLYQEYNELEQKYADGSLIPKPKNWGGYRLTPQLFEFWQGQKSRLHDRWLLPRL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01312 533 PANTHER NAD(P)H-HYDRATE EPIMERASE 87 527 IPR032976 -
Cca03g01312 533 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 96 290 IPR004443 -
Cca03g01312 533 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 514 527 IPR019740 GO:0016638
Cca03g01312 533 Gene3D - 90 332 IPR036652 -
Cca03g01312 533 ProSiteProfiles YjeF N-terminal domain profile. 99 315 IPR004443 -
Cca03g01312 533 SUPERFAMILY YjeF N-terminal domain-like 92 322 IPR036652 -
Cca03g01312 533 Pfam Pyridoxamine 5'-phosphate oxidase 364 450 IPR011576 -
Cca03g01312 533 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 341 531 IPR000659 GO:0004733|GO:0008615|GO:0010181
Cca03g01312 533 Pfam YjeF-related protein N-terminus 115 287 IPR004443 -
Cca03g01312 533 Hamap NAD(P)H-hydrate epimerase [nnrE]. 95 330 IPR004443 -
Cca03g01312 533 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 504 528 IPR019576 -
Cca03g01312 533 SUPERFAMILY FMN-binding split barrel 349 530 - -
Cca03g01312 533 Gene3D - 342 532 IPR012349 -
Cca03g01312 533 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 331 529 IPR000659 GO:0004733|GO:0008615|GO:0010181
Cca03g01312 533 PANTHER NAD(P)H-HYDRATE EPIMERASE 87 527 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01312 K23998 - gmx:100795497 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01312 03 30884185 30892870 Cca03g01312 03 30884185 30892870 ECH