Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01279 ATGGCGAACCGCTCCGTCTCCGCCGGAATCAGACGTTTTTTGTTCGGTGCACGAACTCTGTGTAGCAACGTAGCTTCTCGCGCTTCCGCGTTCCACGAACCGTTCGCGCGCAAATTCAAATCCCCAAAGCAGAGTCCACTGCTCGCGCTTCAAAATTGGGTGGACCAAGGCAACGAGGTTTCACCCTCCCACCTTAGACGCATCGCCAGAACCCTAGTCAAATCGAAGCGTTACCACCACGCTCTTGAGGTATTTAAATGGATTGAAAACCTGAAGAATTTCCATATGATCCCAGCTGATCATACTATGAAATTGGAATTAATCATTGAAAACTATGGTCTAATGGAAGCTGAAGAATATTTTATGAATCTACCTGACTCAGCTGCAAAGAAAGCTGCCTGTTTTATACTTCTACGTGGCTATGTAAGAGATAGGGACACTAGTAAAGCTGAGAATTTCATGGTGAAGCTCTATGAACTGGGGCTAGTGTTGAGCCCTCACCCTTTTAATGAGATGATGAAACTATATCTAGCAACACATGAGTACAGGAAGGTACCCCTTGTTATTCAGCAAATGAAAAGAAATAAGGTGCCCCGCAATGTTCTGTCCTACAACCTTTGGATGAATGCTTGTAGTGAGGAAGAAGGATACGGGATTGAAGCAGTAGAGACAGTTTTTAGAGAAATGCAAAATGACAAGAATGTTGAAGTGGGGTGGAGCAGTCTTGCTACATTAGCCAATGTTTATAAGAAAGCAGGACAATCAAAGAAAGCCATTCTGGTTCTCAAAAATGCTGAAAAAAAACTATCTGCTTGTAACCGTCTTGGTTACTTCTTCCTTATAACACTTTATGCTTCTTTGAAGGAAAAGGAAGGGGTCTTGCGGTTATGGGAAGCTGGTAAGGCAGTTGGTGGAAGAATCAGTTGTGCCAACTACATTTGCGTATTAACATGCTTGCTGAAGCTTGGGGATATTGTACAAGCCAAGAGAATCTTCTTAGAATGGGAATCTAACTGTCAGAATTATGATATCAGAGTCTGTAATGTTCTTTTGGGTGCATATGTGCGGAATGGATTATTGGAAGAAGCTGAATCATTACTTCTCCACACATTGCAAAAGGGTGGTTGTCCAAACTACAAGACGTGGGAAATTCTCATAGAAGGATATGTGAATGTGCAAAAAATGGATGAGGCTATTATTGCCATGAAAAGAGCTTTGGCTCTGACAAAAGATTGTCATTGGAGGCTGCCACATGATCTCGTGTTGGCCATTGCAGAGTATTTGGAGAAAGATGGGAATCTTGAATATGCAAACAAGTATATTACAGATATCCATAATCTGGTAATCTGGAAGTCAATTTCATTCTTGGATTGCACCAGAGGCGTTAAAAAACATAGGCAATCATGCTGTGCTGTTGATATTTGTTTGTACTTGGGGTACTACTATCTTTCTCAGCGTAATGTTCAATCCAAGATACGTAGCCAAATGAAATCCATTCAAAAGCCACAAAGGGCACGTATGTTTTTTCTAGGAAAAATTCAATTCATGCATATTAAAAGCTTTTCAATCCAAGTATCCAACGTCAACCCAGAAGTTTCATCCATTCATCAATCAGTTCCAGCATATTGA 1629 0.4119 MANRSVSAGIRRFLFGARTLCSNVASRASAFHEPFARKFKSPKQSPLLALQNWVDQGNEVSPSHLRRIARTLVKSKRYHHALEVFKWIENLKNFHMIPADHTMKLELIIENYGLMEAEEYFMNLPDSAAKKAACFILLRGYVRDRDTSKAENFMVKLYELGLVLSPHPFNEMMKLYLATHEYRKVPLVIQQMKRNKVPRNVLSYNLWMNACSEEEGYGIEAVETVFREMQNDKNVEVGWSSLATLANVYKKAGQSKKAILVLKNAEKKLSACNRLGYFFLITLYASLKEKEGVLRLWEAGKAVGGRISCANYICVLTCLLKLGDIVQAKRIFLEWESNCQNYDIRVCNVLLGAYVRNGLLEEAESLLLHTLQKGGCPNYKTWEILIEGYVNVQKMDEAIIAMKRALALTKDCHWRLPHDLVLAIAEYLEKDGNLEYANKYITDIHNLVIWKSISFLDCTRGVKKHRQSCCAVDICLYLGYYYLSQRNVQSKIRSQMKSIQKPQRARMFFLGKIQFMHIKSFSIQVSNVNPEVSSIHQSVPAY 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01279 542 Gene3D Tetratricopeptide repeat domain 247 442 IPR011990 GO:0005515
Cca03g01279 542 Pfam PPR repeat 346 368 IPR002885 -
Cca03g01279 542 PANTHER OS12G0527900 PROTEIN 35 451 - -
Cca03g01279 542 PANTHER OS02G0796400 PROTEIN 35 451 - -
Cca03g01279 542 Gene3D Tetratricopeptide repeat domain 36 218 IPR011990 GO:0005515
Cca03g01279 542 TIGRFAM PPR: pentatricopeptide repeat domain 346 376 IPR002885 -
Cca03g01279 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Cca03g01279 542 Pfam Pentatricopeptide repeat domain 167 212 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01279 Cca-Chr3 30330693 30337062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01279 39 435 EF-hand Containing Proteins AT1G02150 31.807 4.91e-73 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01279 - - gmx:100803685 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01279 03 30330693 30337062 Cca03g01279 03 30330693 30337062 ECH