Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01272 ATGGCGAGCGCGTTGGAGACACTGTGCGGGCAAGCGTTTGGGGCGAAGAGGTATCACATGTTGGGAATATACATGCAGAGGTCGTGGATCGTTTTGTTCCTGTGCTGCTTCCTGCTGTTGCCGTTTTACGTTTTGGCAACACCGATTCTGAAGGTGCTGGGACAGCCTGATGACGTGGCGGAGTGGAGCGGTGTGATGGCGGTGTGGCTCATTCCTCTGCACTTCAGTTTCGCCTTTCAGTTCCCTCTGCAGAGGTTCCTGCAGTGCCAGCTGAAAACCGCGGTTATTGCTTGGGTTTCCTTGCTGGGCCTGCTCGTCAACGTTCTCACCAGCTGGCTTTTCATTTATGTCTGGGATTTTGGGCTTTATGGGGCCGCTGTTAGTTTGGACATTTCCTGGTGGGTCCTCGTCTTCGGCATGTACGCCTACACTGCCTGGGGTGGATGTCCGTTAACTTGGACCGGTTTTTCCGTTCAAGCCTTTTCCGGACTCTGGGAATTCTTCAAACTCTCTTCCGCTTCTGGAGTCATGTTGTGCTTAGAGAACTGGTACTATTGGATATTGGTGCTTATGACTGGTCAATTGGAGAATGCAACTATCGCTGTGGATGCCTTGTCTGTATGTATGACCATCAACGGGTGGGAAATGATGGTTCCCCTGGCTTTCTTTGCGGGTGCGGGGGTAAGGGTGGCAAACGAGCTAGGCGCAGGCAATGGGAAAGCAGCAAAATTTGCTACGCTAGTATCGGTGGCACAATCATCGGTGATTGGGTTAATATTTTGCGCTCTGATAATGATATTCCACAACTACGTTGCATACATATTCACCTCAAGCTCTTCTGTCCTTCAAGCTGTTGACAACATGGCATTCCTCTTAGCTGTCACTATCCTTCTCAACAGTATTCAACCCGTTTTGTCAGGAGTGGCTGTTGGTTCGGGATGGCAAGCATTCGTAGCATACATCAATATAGGGTGCTATTACATTGTGGGACTCCCACTGGGAATTATCATGGGATGGGTCTTCAAAACTGGTGTCACTGGAATCTGGGGGGGCATGATCTTCGGTGGTACGGCACTCCAAACTCTGATACTCATCATAGTAACGGCACGATGTGATTGGGAAAAGGAGGCGGAGAAAGCTTCCCTTCGCGTAAATAAATGGTCAAAATCTAATTCCGATGGCACACTGGAGACCTCAAATTAA 1203 0.4963 MASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLCCFLLLPFYVLATPILKVLGQPDDVAEWSGVMAVWLIPLHFSFAFQFPLQRFLQCQLKTAVIAWVSLLGLLVNVLTSWLFIYVWDFGLYGAAVSLDISWWVLVFGMYAYTAWGGCPLTWTGFSVQAFSGLWEFFKLSSASGVMLCLENWYYWILVLMTGQLENATIAVDALSVCMTINGWEMMVPLAFFAGAGVRVANELGAGNGKAAKFATLVSVAQSSVIGLIFCALIMIFHNYVAYIFTSSSSVLQAVDNMAFLLAVTILLNSIQPVLSGVAVGSGWQAFVAYINIGCYYIVGLPLGIIMGWVFKTGVTGIWGGMIFGGTALQTLILIIVTARCDWEKEAEKASLRVNKWSKSNSDGTLETSN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01272 400 CDD MATE_eukaryotic 1 379 IPR045069 GO:0042910|GO:1990961
Cca03g01272 400 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 381 - -
Cca03g01272 400 PANTHER PROTEIN DETOXIFICATION 1 381 - -
Cca03g01272 400 Pfam MatE 1 113 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca03g01272 400 Pfam MatE 175 335 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca03g01272 400 TIGRFAM matE: MATE efflux family protein 1 349 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01272 Cca-Chr3 30218091 30224369 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01272 K03327 - gmx:100500204 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01272 03 30218091 30224369 Cca03g01272 03 30218091 30224369 ECH