Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01260 ATGCTCCACCAGCCTTCACTTTGCGGTTCAAGAATCGCCACTCACTCCACGCTCTTCGCTTCGCTTTCTTCCGCTGGAAACAACGCCGGACGTTGTTCATTTAACGGAAATTCGTCCGTCCGTCACGTGAGGTTGAAGCTTATGAGGCAAGCATCGGGAAGCAAATCGAACAATGAACATGAAGTTTTTAGTGAGGAAGAGTCCTCCAAAGTGATGGAGAGCAAATCATCATGGAAATTTTTTCCGGGGCAGGCATTTCCATTGGGTGTATCAGAAGTTGACAATGGCATCAATTTTGCTATATTTTCACAGCATGCAACTGCTGTCACACTTTGTTTAGTCCTTCCTGAGACTGAGAGGGGAAGTATTGACACATTGGATGGTGGCATGATAGAAATGGTTTTGGACCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCTCGAAGCAATGTTCTGTATGGATATCGCATAGATGGGCCTCGAGACTGGGGTAAGGGGCATCGATTTGACAGCAGCATTGTGCTTGTTGATCCCTATGCAAAACTAGTTGAAGGCCGAAGATATTTTGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGAGAGTTTGCCTTTCGACTGGGGAGAAAATTACAAGCTTCCAAATATTCCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAAATGATGTATCTAGTGGTTTGGATAGCAACATCCGTGGCAGCTATCTTGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAATTGCTGCCTGTCTTCGAGTTTGATGAGTTGGAATTCCAGAGGCGTCCAAATCCCAGAGATCACATGATTAATACATGGGGTTATTCAACAATAAATTTCTTTTCCCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAACGCTTCCCGAGAGTTCAAGCAAATGGTTAAAGCCTTACATTCTGCTGGTATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGACGCCAATCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAAAGGGCAATTGCTGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAATCATCCTGTGGTCATGGAGCTAATTATTGACAGCCTAAGACACTGGGTCACTGAATATCATGTGGATGGATTTCGATTTGACCTTGCGAGTGTCCTGTGTCGAGGAGTTGATGGCTCCCCCCTTAATGCCCCCCCGCTCATTAGGGCAATTGCTAAAGATGAAGTATTATCAAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGAGGTCTCTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTAAGGAAATTTATTAAGGGTGATTATGGCGTGAAGGGGAGCTTTGCTACTCGTGTTGCTGGGTCTTCTGATCTTTACAGAGTGAACAAGCGTAGGCCATATCATGGTATTAACTTTGTTATTGCACATGATGGATTCACTTTGCATGATCTTGTTTCATACAATTTCAAGCACAATGAAGCCAATGGAGAAGGTGGAAATGATGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTTGAAGGGGAAACTGATGATGCTAATATAAGAGCTTTGCGATCACGGCAAATGAAAAATTTTCATTTGGCTTTAATGATATCTCAGGGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACCGCCATTAATAATTTTTTGTGGGATCAGTTGGATGCACGGAAGAGGGATCACTTCAGGTTCTTCTCGGAGGTGATAAAGTACCGGAATACACATGAAGTATTCAGTCATGAAAATTTCCTAAGCAAGAATGACATAACATGGCATGAAGACAATTGGGACAATCTTGACAGTAAATTTCTTGCATTCACGCTTCGTGACAGGAGCGAGGGAGATATCTATTTGGCATTTAATGCTCATGATTACTTTGTCAAAGTTCAGCTGCCGACACCTCCAAAAAAGCGGAAGTGGTTCCGTGTTGTGGATACTAATCTCAAATCTCCAGATGACTTTGTCTTTGATGGTGTCCCTGGCACAGGAAACACATACAATATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTTTTAA 2286 0.4199 MLHQPSLCGSRIATHSTLFASLSSAGNNAGRCSFNGNSSVRHVRLKLMRQASGSKSNNEHEVFSEEESSKVMESKSSWKFFPGQAFPLGVSEVDNGINFAIFSQHATAVTLCLVLPETERGSIDTLDGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPRDWGKGHRFDSSIVLVDPYAKLVEGRRYFGDISMKLSKFLGTYDFESLPFDWGENYKLPNIPEKDLVIYEMNVRAFTNDVSSGLDSNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRDHMINTWGYSTINFFSPMSRYASAGGGSVNASREFKQMVKALHSAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDNKGQLLNFSGCGNTLNCNHPVVMELIIDSLRHWVTEYHVDGFRFDLASVLCRGVDGSPLNAPPLIRAIAKDEVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDYGVKGSFATRVAGSSDLYRVNKRRPYHGINFVIAHDGFTLHDLVSYNFKHNEANGEGGNDGSNDNFSWNCGFEGETDDANIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTAINNFLWDQLDARKRDHFRFFSEVIKYRNTHEVFSHENFLSKNDITWHEDNWDNLDSKFLAFTLRDRSEGDIYLAFNAHDYFVKVQLPTPPKKRKWFRVVDTNLKSPDDFVFDGVPGTGNTYNIAPYSSILLEAKF 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01260 761 Gene3D Immunoglobulins 67 207 IPR013783 -
Cca03g01260 761 SUPERFAMILY (Trans)glycosidases 216 660 IPR017853 -
Cca03g01260 761 SMART aamy 237 644 IPR006047 GO:0005975
Cca03g01260 761 Gene3D - 668 761 IPR013780 -
Cca03g01260 761 SUPERFAMILY Glycosyl hydrolase domain 667 760 - -
Cca03g01260 761 PANTHER GLYCOGEN DEBRANCHING ENZYME 60 759 - -
Cca03g01260 761 SUPERFAMILY E set domains 82 220 IPR014756 -
Cca03g01260 761 CDD AmyAc_Glg_debranch 217 656 - -
Cca03g01260 761 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 87 187 IPR004193 GO:0004553|GO:0005975
Cca03g01260 761 Pfam Alpha amylase, catalytic domain 258 375 IPR006047 GO:0005975
Cca03g01260 761 CDD E_set_GDE_Isoamylase_N 86 237 IPR044505 -
Cca03g01260 761 Pfam Alpha amylase, C-terminal all-beta domain 677 758 IPR006048 GO:0003824|GO:0005975|GO:0043169
Cca03g01260 761 Gene3D Glycosidases 213 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01260 Cca-Chr3 29973027 29992286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01260 1 760 Glycoside Hydrolase AT4G09020 72.490 0.0 1158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01260 K01214 - gmx:100806342 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01260 03 29973027 29992286 Cca03g01260 03 29973027 29992286 ECH