Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01259 ATGTTTCGAGGGCTGAGCTTGGAGGCTCCCATGACTTGGTCTCCGTGTTTCAAACCAACATTTAAACCAAACATTACAAATAAGGTGCCACTGCCACACCCTCGCAGCCGCCAAGGACATACTAGTGCGCACCGCTCCCGCACCGCTTCAGAAACAAACGCGATGGCGCTTACGTTTGAGGTTCTTGGCAGATTCAACCGTGCTCGCGCTGCTCGGTTGACACTCCCTCATTTTGTGTGCCAGACTCCTTTGTTTATGCCTGTGGGCACACAAGGAACAATAAAAGGATTGACAAATAGCCAGCTTGAGGACATTGGTTGCCAAATTATACTTGGAAATACATATCACTTGGCCCTTCGACCTACTTCTGAGCTTCTCGATGAAGTTGGTGGTCTTCATAATTTTATGAATTGGCAACGGGCTCTGCTTACAGACTCTGGTGGCTTTCAAATGGTTTCACTGTTGCATCTTGCTGATATCACAGAAAAAGGCGTGACTTTTCAGTCACCAGTAGATGGAAAACCAATGCTTCTAACACCTGAGGAATCAATTCAAATCCAAAATAGAATTGGAGCAGATATCATTATGGCTCTCGATGATGTTGTAAAGACCACCATTACTGGTCCACGAATTGAGGAAGCTATGTATCGAACACTTAGATGGATAGACAGATGTATAGCAGCTCACAAGAGACCTCATGATCAGAATTTGTTTGGTATTGTGCAAGGTGGTTTAGATCCTGTATTGAGGGATATCTGTGTCAAAGGTATGGTGGAGCGCAATTTGCCTGGCTATGCTATTGGTGGTCTTTCAGGCGGTGAAGATAAAAATTCATTTTGGCGAGTTGTTGCTCAGTGCACTGCTGCCTTGCCAGAGGATAAACCACGATATGTTATGGGAGTTGGTTATCCACTTGATATTGTTGTCTGTAGTGCTTTGGGTGCTGACATGTATGACTGTGTGTATCCTACCCGTACAGCACGCTTTGGCACTGCTCTCGTTCCTGAGGGAGTATTGAAACTAAAACATAGACAAATGGCTGATGACACTCGTCCAATTGATCCTACTTGCCCTTGTATGGTTTGCAAGACCTACAGCAGGGCTTACATCCATTGCCTTGTGACAAAAGATGCAATGGGGTCTCAACTTTTGTCATATCATAATTTATACTACATGATGCAGCTCAGTAGGAATCTACACTCTTCAATAGTTGAAGGGAGGTTCCCAGAGTTTGTATGTGACTTTCTGCGCAAAATGTTCCCAAAAGGTGATGTTCCTGAATGGGTCTGCGATGCCATGAAGGTTGCTGGAATTGATATTTCTTCCTGTTGTGCTCAGTTTTCATCATGCCAAGAATATGATTCCAAAAATATGGTGGAAGAAGAAGAGGTTGTTAGTTTAATGAGGTAA 1410 0.4404 MFRGLSLEAPMTWSPCFKPTFKPNITNKVPLPHPRSRQGHTSAHRSRTASETNAMALTFEVLGRFNRARAARLTLPHFVCQTPLFMPVGTQGTIKGLTNSQLEDIGCQIILGNTYHLALRPTSELLDEVGGLHNFMNWQRALLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIAAHKRPHDQNLFGIVQGGLDPVLRDICVKGMVERNLPGYAIGGLSGGEDKNSFWRVVAQCTAALPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHRQMADDTRPIDPTCPCMVCKTYSRAYIHCLVTKDAMGSQLLSYHNLYYMMQLSRNLHSSIVEGRFPEFVCDFLRKMFPKGDVPEWVCDAMKVAGIDISSCCAQFSSCQEYDSKNMVEEEEVVSLMR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01259 469 Hamap Queuine tRNA-ribosyltransferase [tgt]. 57 418 IPR004803 GO:0008479|GO:0101030
Cca03g01259 469 Pfam Queuine tRNA-ribosyltransferase 67 419 IPR002616 GO:0006400|GO:0016763
Cca03g01259 469 SUPERFAMILY tRNA-guanine transglycosylase 55 418 IPR036511 GO:0006400|GO:0016763
Cca03g01259 469 MobiDBLite consensus disorder prediction 28 49 - -
Cca03g01259 469 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 59 419 IPR002616 GO:0006400|GO:0016763
Cca03g01259 469 TIGRFAM Q_tRNA_tgt: tRNA-guanine transglycosylase 59 419 IPR004803 GO:0008479|GO:0101030
Cca03g01259 469 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 52 443 - -
Cca03g01259 469 Gene3D - 54 421 IPR036511 GO:0006400|GO:0016763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01259 K00777 - gmx:100819664 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01259 03 29955138 29965062 Cca03g01259 03 29955138 29965062 ECH