Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01253 ATGGATAAAAGCTGTCATCCCTCTGCAGACTCTAATACTAGCATAACCATAACCGCATCCTCTGCCTCTGCTGCCAACAATACCAACAGGGAACACTACCTCAGGCACCTCAACAAGCTCTCGCAGAAGATCTCCAAGCCCATCACTAAGAAACCCACCTTCGACCCACCCCAGCCCCAGCCAAACCCGGTCCACGGGCACGGGCCCGCCCAGCAGCACCAGCCGCCGGTGTACAACATCAACAAGAACGACTTCAGGGATGTGGTTCAGAAACTGACGGGCTCACCTGCGCACGAGCGCATATCCACACCCCCTCCCATTCACCAGCCCAAGCCCCCCAGCTCTCGGCTGCAGAGGATTCGCCCTCCTCCCTTGCCGCAAATCACCAACCGTCCTCCGCCGCTCATCAACCCCCGCCCTCAGCAACCCAACGTCAACGTCTTCTCCAGGCCCCCTGCGCCCTTATCTCCGCTGCCGCCCTTCCCCACCGTTCACGCGCCTGCTGAGTCCCCTATCTCCGCCTACATGCGCGATCTGCAGAGTATCGTCGATTCCAACAAGCACTTCTCCGGCTTCTCTGTGGCTcctcagtctcagtctcagcctctgcctctgcctccgcAGCAGTTTcagcagcagcagcagcagcagcagcagcaAGGGATGGGTTCTTCTCAAGCGGCGTTTCAGATGCCGTCTTCTCCTGTGCCTTTTGGATGTCTGAATTCGCAGCTGGCGTCTTACCCTCTGCTCTCGCCGGGTCTTCTCTTTTCACCAACTTCAGGCCAGGGGTTTCCTCAGCTGCCGCTTTCGCCCACCACCCTGCCCGTTCCCAGCCCCCGATGGAAAGGGATTTGA 858 0.5443 MDKSCHPSADSNTSITITASSASAANNTNREHYLRHLNKLSQKISKPITKKPTFDPPQPQPNPVHGHGPAQQHQPPVYNINKNDFRDVVQKLTGSPAHERISTPPPIHQPKPPSSRLQRIRPPPLPQITNRPPPLINPRPQQPNVNVFSRPPAPLSPLPPFPTVHAPAESPISAYMRDLQSIVDSNKHFSGFSVAPQSQSQPLPLPPQQFQQQQQQQQQQGMGSSQAAFQMPSSPVPFGCLNSQLASYPLLSPGLLFSPTSGQGFPQLPLSPTTLPVPSPRWKGI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01253 285 MobiDBLite consensus disorder prediction 1 78 - -
Cca03g01253 285 MobiDBLite consensus disorder prediction 7 31 - -
Cca03g01253 285 PANTHER PROTEIN HAIKU1 1 284 IPR039612 -
Cca03g01253 285 MobiDBLite consensus disorder prediction 190 231 - -
Cca03g01253 285 Pfam VQ motif 73 98 IPR008889 -
Cca03g01253 285 MobiDBLite consensus disorder prediction 103 141 - -
Cca03g01253 285 MobiDBLite consensus disorder prediction 96 141 - -
Cca03g01253 285 PANTHER VQ MOTIF-CONTAINING PROTEIN 9 1 284 IPR039824 GO:1901001
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01253 Cca-Chr3 29826550 29827987 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01253 - - gmx:100808478 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01253 03 29826550 29827987 Cca03g01253 03 29826550 29827987 ECH