Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01242 ATGTCCAGGCCTCTGCACAGAGGGGCATCTGGGATTCGGATCCCTGATAGCAACTATGACTTGTGGGACTCGCAATCCAAAGATAAAGCAGAAAAGGAAGGTTTGGATAGAAGAGGTTCCTCTGGCCTCAGCCCCTCACCCTTGAGGTCTCCCTTTAGGTTGCTTTTACCAGAAAATTCTCATTCCAAATATGGTGTCACTGAGAATGGATTCTCATCTGATCCCTTCATCATTGGCACCCCAAGAAGTAGGCATAAGTTGGTTCTTCTTTTCTTGAAGTTTAGTTTAGTGTTTATAGTTATTCTTGCTCTTGCTGGATCTTTTTGGTGGACAATCTCAATCTCAACTGCATCGAGAGGTCACATATACCACGGTTATAGAAGACTCCAAGAGCAACTTGTATCGGACCTATTGGAGATCGGGGAGATTTCTTATGCTCCCTCAAGGCTGAAAGAGTTGGAATTCTGTTCTCAGGAGTTTGAAAATTATGTTCCTTGCTTTAATGTTTCTGACAATCTAGCTCTTGGTTTTTCTGATGGCAACGAGTTTGACCGGCAATGCAGCCATGAGCTCAGGCAAAATTGTTTAGTTTTCTCACCAGCAAATTACAAAATTCCTCTTAGGTGGCCTACTGGGAGGGATATTATTTGGGTTGCTAATGTTAAAATCACTGCACAGGAGGTTCTTTCTTCTGGAAGCTTGACCAAAAGGATGATGATGCTTGATGAAGAGCAAATTTCCTTTCGTTCAGCCTCTCTTATGTTTGATGGTGTTGAAGACTACTCGCATCAAATTGCAGAAATGATTGGACTCAGAAATGAATCTAACTTCATACAAGCTGGGGTTAGAACCATACTGGACATTGACTGTGGCTACGGTAGCTTTGGAGCACACCTCTTTCAAAGTCAGCTTTTAACTATGTGCATTGCAAACTATGAGCCTTCTGGCAGTCAAGTTCAGCTTACACTTGAGAGGGGTCTTCCTGCTATGGTTGCTTCTTTCACTTCAAAACAATTGCCATATCCATCTCTCTCCTTTGACATGATGCATTGTGCAAGATGTGCCATTGATTGGGACCGGAAAGATGGCATTCTCTTGATTGAAGCTGATAGACTTTTAAGACCGGGGGGATATTTTGTCTGGACTTCACCGCTTACAAATGCTCGTGACAAAGACAGTCAGAAAAGATGGAAATTCATACAAGATTTTACCGAAAACCTTTGTTGGAATATGCTGTCACAGCAAGATGAAACTGTAGTATGGAAGAAAACTAGTAAAAGGAAGTGCTATAGCTCAAGAAAGAATAGTTCTCCCCCTCCTTTGTGTGGCAGAAGCTATGATGTGGAGTCTCCATATTATCGAGAACTGCAAAATTGCATCGGAGGAACACATAGCGGCCGTTGGATTTCTGTTGAAGAGAGGGAAACTTGGCCTTCCAGAGATCATTTGAACAAGAAAGAGCTTGCAATCTATGGGTTGCAATCTGATGAATTTGCTGAGGACTCTGAAAGCTGGAGAGCAGCAGTCCGTAATTATTGGTCTCTTCTGTCACCTTTAATATTTTCTGATCATCCAAAGAGACCTGGTGATGAGGACCCTCCACCACCTTATAACATGCTAAGAAATGTGCTAGACATGAATGCTCATTTTGGTGGTTTTAATTCTGCGTTGTTGCAAGCTGGAAAATCTGTATGGGTAATGAATGTGGTCCCTGTGAGTGCACCCAACTATCTTCCCTTGATCCAGGACCGAGGTTATGTTGGCGTTCTGCATGATTGGTGTGAGGCCTTTCCAACGTACCCTAGAACCTATGACTTGGTGCACGCAGCAGGACTTTTATCCCTTGAATCTGCTCAGCAGCGCCGATGTACCATGCTTGACATGTTCATCGAAATTGACAGGTTACTGCGCCCAGAGGGTTGGATTATAATTCGTGACACAGTTCCTTTAGTAGAGTCAGCAAGAGCTCTAACAACAAGGCTAAAATGGGATGCGCGAGTTGTAGAAATTGAAAGTGACAGCGATCAGAGACTCCTGATCTGTCAGAAACCTTTCTTTAAGAAACAGGCAAATTAA 2076 0.4311 MSRPLHRGASGIRIPDSNYDLWDSQSKDKAEKEGLDRRGSSGLSPSPLRSPFRLLLPENSHSKYGVTENGFSSDPFIIGTPRSRHKLVLLFLKFSLVFIVILALAGSFWWTISISTASRGHIYHGYRRLQEQLVSDLLEIGEISYAPSRLKELEFCSQEFENYVPCFNVSDNLALGFSDGNEFDRQCSHELRQNCLVFSPANYKIPLRWPTGRDIIWVANVKITAQEVLSSGSLTKRMMMLDEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESNFIQAGVRTILDIDCGYGSFGAHLFQSQLLTMCIANYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMMHCARCAIDWDRKDGILLIEADRLLRPGGYFVWTSPLTNARDKDSQKRWKFIQDFTENLCWNMLSQQDETVVWKKTSKRKCYSSRKNSSPPPLCGRSYDVESPYYRELQNCIGGTHSGRWISVEERETWPSRDHLNKKELAIYGLQSDEFAEDSESWRAAVRNYWSLLSPLIFSDHPKRPGDEDPPPPYNMLRNVLDMNAHFGGFNSALLQAGKSVWVMNVVPVSAPNYLPLIQDRGYVGVLHDWCEAFPTYPRTYDLVHAAGLLSLESAQQRRCTMLDMFIEIDRLLRPEGWIIIRDTVPLVESARALTTRLKWDARVVEIESDSDQRLLICQKPFFKKQAN 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01242 691 MobiDBLite consensus disorder prediction 22 38 - -
Cca03g01242 691 MobiDBLite consensus disorder prediction 1 52 - -
Cca03g01242 691 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 280 426 IPR029063 -
Cca03g01242 691 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 14 689 IPR004159 GO:0008168
Cca03g01242 691 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 162 683 IPR004159 GO:0008168
Cca03g01242 691 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 14 689 - -
Cca03g01242 691 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 541 662 IPR029063 -
Cca03g01242 691 Gene3D Vaccinia Virus protein VP39 245 423 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01242 Cca-Chr3 29585642 29594762 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01242 K23870 - gmx:100812530 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01242 03 29585642 29594762 Cca03g01242 03 29585642 29594762 ECH