Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01241 ATGGCTTGGCGCTTCTTCTCCTTCCTCTCCAAAATCAAATCCTCTAAAACCCTAAACCCTAATGTTAACCCCTCCTCCACCAAATCCCCATTTTCCACCTCCTTCCTCGTCACCAAAACCCCCAAaagcctcaagaaaaaacgcaagcccaagcccagcccgcgaaccaccccggtccagacccaacccaaccGCATCCACGAACTCGAGCGCATCCTCCACCGCGACGCCCTCCTCCGCTTCGTCACGCGCTCCAAGCTCTTCCTCTCCACCCAGCCGGAGCACGTCCTCCGCCTCGACGACGCCGGCAAGCTCCACCGCGAGCTCGGCTTCCCGCGCGGCCGCAAGGTCTCCCGCTTCATCCGCCGCCACCCCCTCCTCTTCCAAACCTACCGCCACACCGACGGCAAAACCTGGCTCGGCTTCACCGACCTAATGGAGGACCTCCTCGCAGAGGAACACTCCCTCATGGACTCCATGGAACTCAACCGCGTCGAGAAGGTTCGAAAGCTTCTCATGATGTCCGCGCGCCACCGCATCCCCCTCAGCAAGATCCACCACTGCAGAACCCTATTCGGCATCCCCGACGATTTCCGCGATAGGGTTTCCAAGTACCCTAATTTTTTCAACGTCGTCATCGACAACGACCGTAGGAGGGTTCTCGAGTTGGCGAATTGGGACCCTCTTCTTGCCGTGAGCGCGCTCGAGAGGGAGTTCGTGGTTGACGAGGATGGCGCCAAGAGGAAGTTTAGTTTTCCGCTGAAGCATGGTAAGGGTTTGGATTTGGAGGTTGATGATAAGAAGAAGCTTGATTTGCTTAACGCGCTTCCTTTGGTGTCTCCCTATTCCGATGGGTCGAAGTTTGATGCTTGGACGTTGGAGGCGGAGAAGTATAGGGTTGGGGTGGTTCATGAGTTTTTGAGCTTGACGTTGGAGAAGAGGGCGTCGATTCATCACCTTGTGGAGTTTAAGGAGGAGTTTAGTTTGACCAAACATACTTATGAAATGCTGAGGAAGCAGCCACGGGCGTTTTACTTGGCCGGAACTGAGATGAATTGGGCCGTGTTCTTGAAGGATGCGTATGATCGGAATGGGGTGTTGATTGAGAAGGATCCCCAGGTGGTGTTTAATGAGAAGCTCTATAAGTATGCTCAGGTGGATGAGATGGAACCTGGGTCTGATGATAGGGTGGAAGAGCAGCATTTGAAGAAGAAGGAAGTTTCTTTTCATAATTCAATCTATGCTTGTGGTTGGCTTCACGGGTCCTCTTTGATTCCAAGGAGGAGCAAAGAGGATTGGATAGGAGGGGTGGCAAGGATTTTAGTAATGCTTCAGTTTCACTGTATACGCTTTGACAAGAATAGCAGGCAAATCTTGTTTGGCCTCGATTCCTTCAAAATTCAAATAGATGCCACACAGGTTTGGAATTTGGATGATTATGATAGCGACAAGACAACAGTACGTAGGAACAGGCTAGCCAATTACTGTTTTGCATGCGAAGATTGTTCAAGTTTGCAAAAGCCAGATGATGACATCAACTTCCACACATTAAAATTGGAAACAATGAAGACTGCATTACGTCAAGTCTTAAGCCAATAG 1599 0.4853 MAWRFFSFLSKIKSSKTLNPNVNPSSTKSPFSTSFLVTKTPKSLKKKRKPKPSPRTTPVQTQPNRIHELERILHRDALLRFVTRSKLFLSTQPEHVLRLDDAGKLHRELGFPRGRKVSRFIRRHPLLFQTYRHTDGKTWLGFTDLMEDLLAEEHSLMDSMELNRVEKVRKLLMMSARHRIPLSKIHHCRTLFGIPDDFRDRVSKYPNFFNVVIDNDRRRVLELANWDPLLAVSALEREFVVDEDGAKRKFSFPLKHGKGLDLEVDDKKKLDLLNALPLVSPYSDGSKFDAWTLEAEKYRVGVVHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYEMLRKQPRAFYLAGTEMNWAVFLKDAYDRNGVLIEKDPQVVFNEKLYKYAQVDEMEPGSDDRVEEQHLKKKEVSFHNSIYACGWLHGSSLIPRRSKEDWIGGVARILVMLQFHCIRFDKNSRQILFGLDSFKIQIDATQVWNLDDYDSDKTTVRRNRLANYCFACEDCSSLQKPDDDINFHTLKLETMKTALRQVLSQ 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01241 532 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 1 393 IPR045040 GO:0003723
Cca03g01241 532 PANTHER OS09G0473400 PROTEIN 1 393 - -
Cca03g01241 532 Pfam Plant organelle RNA recognition domain 65 386 IPR021099 GO:0003723
Cca03g01241 532 MobiDBLite consensus disorder prediction 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01241 Cca-Chr3 29580392 29584436 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01241 - - gmx:100813429 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01241 03 29580392 29584436 Cca03g01241 03 29580392 29584436 ECH