Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01239 ATGCCCATGGCGACGCCGGAACCCTCCCCCGACCACATCGACTCGCTTCCTCTGGTCGACCTCCGCCTCCTCTCTCAATCCGAACTCTACACCCTCTCCCTCTCCGGCGCCACTCACCGCCACCGCCGCACCGAAGACGACTCCGTAATCCCCAAAATCGACCGTTCCGTTTTCAACGAGTCCGCCGGCAGCCGCAAGCAGACCTACTCCAAACTCCGCCTCAACAAACAAAAACCAAACTCCGCCGTTCCCGCCTCCTCCTCCTCATTCCACATTCCCCTCCACATTCCCGAGCCCGTCGACCAGGAAAACTCCCAAATCATCGCTCTGCTGCAACAGCTCTTCGGCGTCGAGCCTCTCCGCAACGCGTCGCGCCGCAATGACGCCGAGGACCGCCGCCTCGTTCCTGTCCAGGTCGAGTTCAAGCCACCGCTTCCGGAATACGCCACGCTCCGGAACGTTCCGATTGACGTCGTGGACGGCGGCCAGAGGAAGCGGAAGCGCGGCCGGCCGCGGAAGAACGAGAATTCGGTAACGGTTTTCGCGGAGGAGCCGGTGAAGGTTGACGTCGATggtaacggtaacggtaacggcgagggcaacgtggcggcaacggtTATCGATCAGGGTTTCGTGGTTGACGCGGTTCGTTTGGACGGGGATCCATTTGGGGAGGAGTTGAAGAGAAGGACCCTAGGTTTGGAGACGGAGTCGCAGTTGTTGGAATTCTTGGAGACTTTGAATGGAGAGTGGGCGAGTCAGAGGAAGAAGAGGAGGATTGTGCCTGCTAGTGATTTCTGCGACCTGTTACCTGCGGGATGGAACGTCGTGCTTACTCTTTTGAAGAGGGCAGGTCGTGCTTCCGTTGTTTGTCGCCGTTACGTAAGTCCTGGAGGACACCAGTTTGAGTCGTGCAAAGAGATTTCTGCACACTTGCTTTCTGTTTCTGGCGCTCAAGATAGAAACTATTTAAAATCTAGTTATATTGATGGGTCTCAGCAATTATCCAGTAGTATGAACATGGCTTCTGGAAGTATTGTTGGTCATGCTCCTACCGGAGACATGAAGACTGATGCCAATACGAGTTATTTGTCTTTAGCTGGTGCATCTATACACTCTAGTCATGAGAAGCAGGCCACCGCACCATTATCAATTGGGTGTGAAAATTTCAATAGTGATCTGTCTTTGGGTTGTAAATTAGCAGATACTACTGGTGGAGCCTTTAGAGACTTTGTCCATCAAACTGAAGATAAGCAACTATTGAAGTCTGATAAGAATGATGGAAATTCAGTTCAGGGATGTTCTCTTGTGGAGGATAAACTTGGTAATGTACACAGTGAGAAGTTGGTTGCTGCTGTTGAGGCTAGTGATGCTGCATGCAATCTTTACATTCCTTTAGTTTTTCCAACTCCTTTCTCCAATGATAACAGGGCCAATGGTCAGTTTTCTGATGAAATAAATGCTGCCACATGCATAAAAGGTGGCATTGGTAATTTTGTTAGTCAGGATAGAGATGCTGGAAGCTGTGAAACTGTTCCTTGTGGAAATGAACAGGCACATGTTGACAACAATAGGCTTGGGCTTTCTGAGAAATTAGTGGAAGAGAACATTCAGAAATCAAGTCTTGAAAGCAGCATGCTGGCTCCAAATTCTGAGCAGAAAATATTTGCTGATAAAAATTTAGATGATGTATATCTTACTAGTTCACTAGAGGATATGATGGAGATTAGAGATGGAAAGGCCATCAAGGATGACAAACAACAAATTTTTTGTAGCAGAGACCAGGCTGAAATTAAAGATGTTTCTACTAATGCTAAGCTGCAGAGTAGTTCTGAGGGTTGTTCACTTGTCTCCTCTCAGAATGAACTTAAAAATACATCTATAAGTAATGTGGACAGAACACAGACTTCCATGCTGAAGGACTCTGCTGAGGAAAATATTTTTGACAGTGATTTATTTAGCGCATCTATTGATGAAAGAAAATGTGTTCACAGTGGTTACATCAGTAATGTTTCTTTTAGCTCTTGCACACAAGATGCATCCGAGTATGGTGGATTTGATTTTGCTTCTGATCTTAAATTAACTAAGGATGTTAGTGATAATCATATTCTTTCAAGTGAGGAAGCTGTGATAAGATGTTTACAGGAAAGGAGTTCCTTGAGTGACCAAAATAGCATGATGGACAATCTGTTGCACAGAAGTTCTGAAAGTAACTTATTTGCTCTAACTGGGGATCAGCACCCATCTGCTTTTCATGATAATGTGAATAATATCTCCAATGGAACCTTTGGTGCACTGAAAGCTGTTGATTCTGGTTGCATGGAGCCACAGTTAGGCATTGTTTCTTGCAGCAATATTGCTGTAGATGCATATACTACAAGCATTATGCAGGGACAATCACAAGGATGTGTATCTGTTCCTCTTGGTGGAGGTATATTAAACTTTGACAAACAAAGTGATGATGGTGTTAGTAAAGCCAATAAATCTTGCTTATCAGAGATGGCTCAGAATGAAGTTGAAATATTCCAAACTGACTCTACGGGTCTGCCCAAATTTCGGTAG 2562 0.4493 MPMATPEPSPDHIDSLPLVDLRLLSQSELYTLSLSGATHRHRRTEDDSVIPKIDRSVFNESAGSRKQTYSKLRLNKQKPNSAVPASSSSFHIPLHIPEPVDQENSQIIALLQQLFGVEPLRNASRRNDAEDRRLVPVQVEFKPPLPEYATLRNVPIDVVDGGQRKRKRGRPRKNENSVTVFAEEPVKVDVDGNGNGNGEGNVAATVIDQGFVVDAVRLDGDPFGEELKRRTLGLETESQLLEFLETLNGEWASQRKKRRIVPASDFCDLLPAGWNVVLTLLKRAGRASVVCRRYVSPGGHQFESCKEISAHLLSVSGAQDRNYLKSSYIDGSQQLSSSMNMASGSIVGHAPTGDMKTDANTSYLSLAGASIHSSHEKQATAPLSIGCENFNSDLSLGCKLADTTGGAFRDFVHQTEDKQLLKSDKNDGNSVQGCSLVEDKLGNVHSEKLVAAVEASDAACNLYIPLVFPTPFSNDNRANGQFSDEINAATCIKGGIGNFVSQDRDAGSCETVPCGNEQAHVDNNRLGLSEKLVEENIQKSSLESSMLAPNSEQKIFADKNLDDVYLTSSLEDMMEIRDGKAIKDDKQQIFCSRDQAEIKDVSTNAKLQSSSEGCSLVSSQNELKNTSISNVDRTQTSMLKDSAEENIFDSDLFSASIDERKCVHSGYISNVSFSSCTQDASEYGGFDFASDLKLTKDVSDNHILSSEEAVIRCLQERSSLSDQNSMMDNLLHRSSESNLFALTGDQHPSAFHDNVNNISNGTFGALKAVDSGCMEPQLGIVSCSNIAVDAYTTSIMQGQSQGCVSVPLGGGILNFDKQSDDGVSKANKSCLSEMAQNEVEIFQTDSTGLPKFR 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01239 853 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 6 836 - -
Cca03g01239 853 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 6 836 IPR037472 -
Cca03g01239 853 SUPERFAMILY DNA-binding domain 265 314 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01239 Cca-Chr3 29529653 29539101 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01239 - - gmx:100780637 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01239 03 29529653 29539101 Cca03g01239 03 29529653 29539101 ECH