Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01238 ATGAGGATGAGGGTTTGGGGATCGGAGATCGTGTTCGCGTTGTTCCTCTGTGGGACCCTCTCATGCACCGCTCAATCGCATCCTAACAATAGGGTTTCTCTCTCCACCACCGTCTGTCCCCTTCGCTCCGCTCTCGATTTCATCTTGCGCCTTCCAGATTCCACCTGCCCCCTTCCCGATTCTCTTCGATCCATTGCCGTCACCGAGGGAGATGAGGTTTCTTTGCAGAAGGCACTCAATATGGTTCACAAGAATAATCATGAGTATGTGGCTGTGCTCTTCTATGCATCGTGGTGCCCTTTCTCGCGGGTGTTTAGACCGGTTTTCTCTGTCCTCTCTGCGCTGCACCCTTCCATTCCTCATTTTGCTATTGAAGAATCGTCGGTTAGGCCAAGCATACTGTCCAAATACGGTGTCCATGGTTTCCCTACGCTCTTCATTTTGAATTCTACCATGAGGGTTCGTTATCATGGGTCTCGGACACTTGGCTCACTTATTGGTTTTTACAACGATGTTACCGGGATTAGGATTGATTCACTTGATCAACTATCGCTTGAGAAAATTGGTCGTTCATCTACTGATGAGAAGCATGGTAACACTGAGCCAGAAAGTTGTCCATTTTCATGGGCTAGATCTCCAGAAAATTTACTGCGTCAGGAAACTTACTTGGCTCTGGCCACTACATTTGTGGTTTTGAGATTACTATACTTGTTTTTTCCATCGCTGCTTATATGTATTCAATATGCCTGGAGAAGGGTCATCCAAAATGTTAGAATATGGAGCTTGCTGGAACATCCTTTGATTTGTTTGAAGCGGCTAATACAGTCATTTGACTGTTTGAAAGAGCCGTGCAAGAGAAGTAATCTGCAGGAAGGAGCAATGAATGCTAGAGCATGGGCTTCCAAGTCCCTTGCCACCGTTTCAATTGGAGAGGAAAGCAGCAGCCGAGGGATGCACCAGTGA 963 0.4683 MRMRVWGSEIVFALFLCGTLSCTAQSHPNNRVSLSTTVCPLRSALDFILRLPDSTCPLPDSLRSIAVTEGDEVSLQKALNMVHKNNHEYVAVLFYASWCPFSRVFRPVFSVLSALHPSIPHFAIEESSVRPSILSKYGVHGFPTLFILNSTMRVRYHGSRTLGSLIGFYNDVTGIRIDSLDQLSLEKIGRSSTDEKHGNTEPESCPFSWARSPENLLRQETYLALATTFVVLRLLYLFFPSLLICIQYAWRRVIQNVRIWSLLEHPLICLKRLIQSFDCLKEPCKRSNLQEGAMNARAWASKSLATVSIGEESSSRGMHQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01238 320 ProSiteProfiles Thioredoxin domain profile. 52 193 IPR013766 -
Cca03g01238 320 Pfam Thioredoxin 84 167 IPR013766 -
Cca03g01238 320 PANTHER 5'-ADENYLYLSULFATE REDUCTASE-LIKE 4-RELATED 1 319 - -
Cca03g01238 320 CDD PDI_a_ERp44_like 70 169 - -
Cca03g01238 320 SUPERFAMILY Thioredoxin-like 85 174 IPR036249 -
Cca03g01238 320 Gene3D Glutaredoxin 65 178 - -
Cca03g01238 320 PANTHER 5'-ADENYLYLSULFATE REDUCTASE-LIKE 4-RELATED 1 319 IPR044606 -
Cca03g01238 320 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01238 Cca-Chr3 29519608 29525509 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01238 - - gmx:100815032 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01238 03 29519608 29525509 Cca03g01238 03 29519608 29525509 ECH