Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01233 ATGGCAATGCAGGCAGGGGATCTCTGCCAGCAACGAAATTCGCATTCTTCTCCCATTTTCTTCAATCCGATTTCCGATTTTGGTTCCTTCACCGGAGGGTTGTTTCTCGACCCCAAAATTCCCGATTCCTTTGTTCGTTCCATTTCCTTGAAGATTCACGCCACTGCTTCTTCCGATACCAATCTTCGCCGGCATCGGAGTAGGGTTCCGGCAGGGATTTTTTTGTCCTTGAGCTTGCCCACTGCTAAACTCGTTGCAGAACCCAATCTGCAAAGTGGTGAACACGTGTCCGACAAGGAGACCACCTCGAACGGCGTCGTTCAGCAAAGAAAGGTTAGGGTACGAGGAGGCAATGCCGTCAACACCACCAAGCATCTCTGGGCTGGTGCTATAGCTGCTATGGTCTCTAGAACTTGTGTTGCTCCACTTGAAAGACTTAAGTTGGAGTACATAGTTCGTGGTGAGAAGAGGAATATATTGGAGCTTATTAGCAAAATCGCGACCTCTCAAGGGTTGAGAGGGTTTTGGAAAGGGAACCTTGTAAATGTTCTGCGGACAGCTCCATTCAAAGCGGTTAATTTTTGTGCTTACGATACTTATAGAAAGCAACTGCTCAGGTTTTCCGGGAATGAGGAAACTACCAATTTTGAGAGGTTTATTGCTGGTGCTGCTGCTGGGATTACTGCTACCATTATTTGCCTTCCACTTGACACTATCCGGACCAAGTTGGTGGCACCTGGTGGAGAAGCTTTGGGTGGGGTAATTGGTGCTTTCCAGTACATGATTCGAACTGAAGGATTCTTTTCTCTTTACAAGGGTTTAGTACCATCAATTATAAGTATGGCTCCTTCTGGTGCAGTTTTTTATGGTGTATATGATATACTGAAATCAGCGTATCTGCATTCACCAGAAGGAATGAAGAGAATCCAGAATATGCATAAACAGGGTCAGGAACTCAGTGCCTTTGATCAGCTTGAGTTAGGGCCTGTAAGAACATTGTTGTATGGGGCTATTGCTGGTGCATGTGCAGAAGCTGCTACATACCCATTTGAAGTGGTGAGGAGGCAACTTCAATTGCAAGTCCAGGCTACTAAATTAAGTTCTCTAGGAACTTTGGTCAAAATAGTTGACCAGGGAGGCATTCCAGCTCTCTATGCGGGACTTGTTCCCAGCTTATTACAGGTACTTCCTTCAGCTTCAATAAGTTACTTTGTCTATGAGTTCATGAAGATTGTTCTGAAAGTGGAGTAG 1251 0.454 MAMQAGDLCQQRNSHSSPIFFNPISDFGSFTGGLFLDPKIPDSFVRSISLKIHATASSDTNLRRHRSRVPAGIFLSLSLPTAKLVAEPNLQSGEHVSDKETTSNGVVQQRKVRVRGGNAVNTTKHLWAGAIAAMVSRTCVAPLERLKLEYIVRGEKRNILELISKIATSQGLRGFWKGNLVNVLRTAPFKAVNFCAYDTYRKQLLRFSGNEETTNFERFIAGAAAGITATIICLPLDTIRTKLVAPGGEALGGVIGAFQYMIRTEGFFSLYKGLVPSIISMAPSGAVFYGVYDILKSAYLHSPEGMKRIQNMHKQGQELSAFDQLELGPVRTLLYGAIAGACAEAATYPFEVVRRQLQLQVQATKLSSLGTLVKIVDQGGIPALYAGLVPSLLQVLPSASISYFVYEFMKIVLKVE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01233 416 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 298 IPR018108 -
Cca03g01233 416 ProSiteProfiles Solute carrier (Solcar) repeat profile. 327 412 IPR018108 -
Cca03g01233 416 PANTHER SOLUTE CARRIER FAMILY 25 25 416 - -
Cca03g01233 416 Gene3D Mitochondrial carrier domain 116 415 IPR023395 -
Cca03g01233 416 Pfam Mitochondrial carrier protein 327 413 IPR018108 -
Cca03g01233 416 Pfam Mitochondrial carrier protein 120 205 IPR018108 -
Cca03g01233 416 Pfam Mitochondrial carrier protein 213 300 IPR018108 -
Cca03g01233 416 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 25 416 - -
Cca03g01233 416 SUPERFAMILY Mitochondrial carrier 118 409 IPR023395 -
Cca03g01233 416 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 203 IPR018108 -
Cca03g01233 416 PRINTS Mitochondrial carrier protein signature 125 138 IPR002067 GO:0055085
Cca03g01233 416 PRINTS Mitochondrial carrier protein signature 138 152 IPR002067 GO:0055085
Cca03g01233 416 PRINTS Mitochondrial carrier protein signature 178 198 IPR002067 GO:0055085
Cca03g01233 416 PRINTS Mitochondrial carrier protein signature 228 246 IPR002067 GO:0055085
Cca03g01233 416 PRINTS Mitochondrial carrier protein signature 271 289 IPR002067 GO:0055085
Cca03g01233 416 PRINTS Mitochondrial carrier protein signature 336 358 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01233 Cca-Chr3 29359349 29362982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01233 198 410 Organic Solute Cotransporters AT5G64970 19.718 9.23e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01233 - - gmx:100812227 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01233 03 29359349 29362982 Cca03g01233 03 29359349 29362982 ECH