Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01231 ATGGCCGGTGGAGGGTTCGCAGTGGATTCACCAAACAATGACTTCGCTGGAAAAATAACACTCTCAGTTATCATCACTTGCATCGTTGTTGCTTCCAGTGGACTCATTTTTGGATATGACCTCGGTATTTCAGGAGGTGTGACAACAATGGTACCATTTCTGAAGAAATTCTTCCCTGATATACTGAGAAAGGCTGCTAGTGCAGAAGTAAACATGTACTGTGTGTATGACAGTCAGATATTGACATTATTCACGTCTTCTCTATACCTAGCTGGGTTAGTGTCATCTCTTGTAGCTAGTAAAGTCACAAGTGCCATGGGTCGGAGAAACACCATCATTTTGGGTGGTACCATCTTTCTTATCGGTGGTGGACTTAACGGAGGTGCTGAAAATATCTCTATGCTCATTTTGGGCCGTATCATGCTCGGCCTTGGCGTCGGTTTCACTAATCAAGCTGCGCCACTGTACCTTTCTGAAATCGCACCACCGAAATGGCGAGGAGCTTTCAACACAGGGTTCCAATTTTTCATATCAGTTGGAGTGCTTGCCGCAGGCTGCATAAACTTCGGAACAAAGGATCATACATGGGGGTGGCGAGTCTCTCTTGGCCTCGCCGTGGTCCCCGCAGCCGTTATGACAGGTGGTGCCTTCCTTGTAACTGACACTCCCAGCAGCTTGGTTGAACGTGGCAAAATAGACCAAGCCAGAAAGGCCTTGGTCAAAGCCAGAGGATCCTCCATCGACGTTGAACCCGAATTGGAAGAACTCATTAGGATGTCACAAGTTGCAAAATCTATGCAGGAGGAGCCCTTCAAGACCATATTTGAGAGGCGCTATCGACCCCATTTGGTCATGGCGATTCTTATCCCCTTTTTTCAACAGCTCACGGGGATTAACATCGTTGCATTTTATTCTCCTAACCTCTTTCAATCAGTGGGTTTTGGACACGATGCCGCTTTACTTTCTACCATTATACTCGGAGTAGTCAACCTTATTTCTCTCTTAATCTCCACGGCTATTGTTGATCGCTTTGGTCGAAAATTCTTGTTCATATCTGGTGGCCTTGTCATGTTTGTTTGCCAGATTGCGGTGTCTACTGAGCTAGCAGTGGTGACCGGTGTTCATGGTACAAAGGATGTATCCAAGGGAAATGCAATTCTGGTGTTGGTGCTTCTCTGTTTCTACTCGGGAGGTTTTGGTTGGTCGTGGGGCCCTCTCACCTGGCTAATTCCGAGTGAAATTTTCCCCTTAAAGATCAGAACCACTGGACAAAGCATAGCTGTTGCTGTGCAGTTCATAACCATATTTATATTGTCCCAAACATTCTTGTCAATGCTATGCCACTTTAAGTTCGCTGCCTTCTTGTTCTATGCGGGTTGGATTGTGATCATGACTATCTTTGTTATATTTTTCTTGCCCGAGACTAAAGGAATCCCCTTGGAGTCAATGCAGACCATATGGGGTAAACACTGGTTTTGGCGCCGCTTTGTCAAAGAAGTTCACGAAGAAAATCATCCATGA 1521 0.4576 MAGGGFAVDSPNNDFAGKITLSVIITCIVVASSGLIFGYDLGISGGVTTMVPFLKKFFPDILRKAASAEVNMYCVYDSQILTLFTSSLYLAGLVSSLVASKVTSAMGRRNTIILGGTIFLIGGGLNGGAENISMLILGRIMLGLGVGFTNQAAPLYLSEIAPPKWRGAFNTGFQFFISVGVLAAGCINFGTKDHTWGWRVSLGLAVVPAAVMTGGAFLVTDTPSSLVERGKIDQARKALVKARGSSIDVEPELEELIRMSQVAKSMQEEPFKTIFERRYRPHLVMAILIPFFQQLTGINIVAFYSPNLFQSVGFGHDAALLSTIILGVVNLISLLISTAIVDRFGRKFLFISGGLVMFVCQIAVSTELAVVTGVHGTKDVSKGNAILVLVLLCFYSGGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVAVQFITIFILSQTFLSMLCHFKFAAFLFYAGWIVIMTIFVIFFLPETKGIPLESMQTIWGKHWFWRRFVKEVHEENHP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01231 506 Gene3D MFS general substrate transporter like domains 16 490 IPR036259 -
Cca03g01231 506 SUPERFAMILY MFS general substrate transporter 28 484 IPR036259 -
Cca03g01231 506 ProSitePatterns Sugar transport proteins signature 2. 141 166 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca03g01231 506 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 12 500 IPR045262 GO:0015144
Cca03g01231 506 PRINTS Sugar transporter signature 34 44 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g01231 506 PRINTS Sugar transporter signature 136 155 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g01231 506 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g01231 506 PRINTS Sugar transporter signature 389 410 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g01231 506 PRINTS Sugar transporter signature 412 424 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g01231 506 TIGRFAM SP: MFS transporter, sugar porter (SP) family 21 482 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g01231 506 CDD MFS_STP 29 474 IPR044778 GO:0015145|GO:0015749
Cca03g01231 506 Pfam Sugar (and other) transporter 27 487 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca03g01231 506 ProSiteProfiles Major facilitator superfamily (MFS) profile. 26 476 IPR020846 GO:0022857
Cca03g01231 506 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 12 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01231 Cca-Chr3 29290043 29294268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01231 50 498 Organic Solute Cotransporters AT1G34580 64.602 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01231 K24193 - gmx:100817692 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01231 03 29290043 29294268 Cca03g01231 03 29290043 29294268 ECH