Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01227 ATGGCCATAGGCGCAGCAGTTACCGGTATGTGCACGCTCACTCCAACGCTCTCTTCGTTCAACCACCCCACGCGCCTCCTCTCACGCGCTACTTTCGCTGCGAAGCTTCGATTTCCACTTCCATTTCGAGCTTCTTCCACGGCCTTGCTCCACACCGACACCGATCCAACAGATTCCATCGTAGTTGAAAAGGAAGAAAGCAAGAGTCGCCACTCGTTGGCTTGTCCCGTGTGTTACGATTCCTTGACATGGAACGCTGATCCTGGTTTGTCCGTAGATACTGTCCCTGGATCTAGTTTTCAATGTAGCACCTGTCAGAAAACATATGTTGGTAACCAAACGCATCTTGATCTCACCGCAACAGCTGGAGCCAAGAGCTACGGTGAACCCATGCCAGCTTCCACAGAGCTTTTCAGGGTGCCATTGATATCATTTCTCTATGAGAGAGGCTGGCGTCAAACCTTTTCTGCGTGGGGTGGTTTTCCAGGTCCTGAGAAAGAGTTTGAAATGATGAAGGGTTTCTTAAAGCCAGTATTGGGTGGAAATATCATTGATGCTAGTTGTGCAAGTGGATTATTTTCAAGATTATTTGCAAAAAGTGGACTTTTTTCTTTTGTTGTTGCTCTAGACTACTCAGAGAACATGTTGCGGCAATGTTATGAATTCATTCAGAAGGAAGAGAATTTTCCAAAAGAGAACTTCATCTTGGTTAGAGCAGACATATCTAGGCTCCCTTTTGTTTCCAGTTCCGTTGATGCTGTACATGCAGGTGCAGCTCTCCACTGTTGGCCTTCACCATCAGCAGCTGTAGCTGAAATAAGTCGTGTTTTACGACCTGGAGGCGTGTTTGTTGCAACCACCTACATACTTGATGGGCCTTTTTCTGTTATCCCATTTTTAAGTACAATACGTCAGACTGTAAGGCAAGTGTCTGGGAGCTACATCACTCTCTCTGAACGTGAACTTGAAGATCTCTGCAGGGCGTGTGGGCTTGTTGGATTTAAATGCATTAGAAATGGGCTTTTTGTGATGATTTCTGCTACAAAACCCAGTTAA 1056 0.4593 MAIGAAVTGMCTLTPTLSSFNHPTRLLSRATFAAKLRFPLPFRASSTALLHTDTDPTDSIVVEKEESKSRHSLACPVCYDSLTWNADPGLSVDTVPGSSFQCSTCQKTYVGNQTHLDLTATAGAKSYGEPMPASTELFRVPLISFLYERGWRQTFSAWGGFPGPEKEFEMMKGFLKPVLGGNIIDASCASGLFSRLFAKSGLFSFVVALDYSENMLRQCYEFIQKEENFPKENFILVRADISRLPFVSSSVDAVHAGAALHCWPSPSAAVAEISRVLRPGGVFVATTYILDGPFSVIPFLSTIRQTVRQVSGSYITLSERELEDLCRACGLVGFKCIRNGLFVMISATKPS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01227 351 Gene3D Vaccinia Virus protein VP39 138 349 IPR029063 -
Cca03g01227 351 PANTHER OS08G0411200 PROTEIN 59 350 - -
Cca03g01227 351 Pfam Methyltransferase domain 185 284 IPR013216 GO:0008168
Cca03g01227 351 CDD AdoMet_MTases 182 290 - -
Cca03g01227 351 PANTHER METHYLTRANSFERASE 59 350 - -
Cca03g01227 351 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 147 340 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01227 Cca-Chr3 29202200 29206218 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01227 - - gmx:100819297 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01227 03 29202200 29206218 Cca03g01227 03 29202200 29206218 ECH