Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01217 ATGTTGTCCTTGTCAAGAGAAGCCTTGCCTCTACATGCTTCACGCTTAGCTCTGAGGAATTTGCTGTGGGCAACTTCAAAGCATGATGTATACCTTATGCAAAACTACTCAGCGATGCATTGGTCCTCAGTACTACGAAGGGGTAAAGAAGTGCTCAACGTAGCCAAACCAATTATTCCAACCCTTAAGCGTCCTGGATTTTTAGCTCAGCCTGTCTCCAGAGTTCAAATAAGCACCATGACTGTTAAGGAAAATTTGATGGTGGCAGGTGGTTTCCAGGGTGAACTTATTTGCAAGAATTTGAAACATCCTGGAGTTTTATTCTGTGGTAAAATAAGTACTGATGATAATGCCATAACCAATGCTGTGGATGTTTTCCGCAATCCAGCTGGGTCGTTGAGGGTCATCACAGCAAATAATGATTCCCAAGTCCGGGTTTTTGATGCAGAAAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAATACTTCTGTTAGTCCGGACGGAAAGTTGTTGGCTGTTCTTGGGGACAGTACCGAGTGCTTGATAGCTGATGCTAACACCGGGAAGATTACTGGGAGCCTAAAAGGGCACTTGGACTACTCTTTTGCATCGGCTTGGCACCCAGATGGACGAATATTGGCCACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATAAGAAATCTTTCACAATCTATGGCTGTGTTGAAGGGAAGAATGGGTGCAATAAGAGCCTTGAGATTCACATCTGATGGACGGTTTTTGGCCATGGCCGAGCCAGCAGATTTCGTCCATATTTTTGACTCGCATTCTGGTTATGTACAAGGTCAAGAGATAGATCTATTTGGCGAGATTGCTGGTATATCCTTTAGCCCAGACACAGAGGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCATCAGAAAACGTCACAATTATTACCTTGACTCCATGTTTTAA 996 0.4367 MLSLSREALPLHASRLALRNLLWATSKHDVYLMQNYSAMHWSSVLRRGKEVLNVAKPIIPTLKRPGFLAQPVSRVQISTMTVKENLMVAGGFQGELICKNLKHPGVLFCGKISTDDNAITNAVDVFRNPAGSLRVITANNDSQVRVFDAENFASLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADANTGKITGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYVQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFIRKRHNYYLDSMF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01217 331 SMART WD40_4 192 231 IPR001680 GO:0005515
Cca03g01217 331 SMART WD40_4 235 274 IPR001680 GO:0005515
Cca03g01217 331 SMART WD40_4 93 148 IPR001680 GO:0005515
Cca03g01217 331 SMART WD40_4 151 189 IPR001680 GO:0005515
Cca03g01217 331 ProSitePatterns Trp-Asp (WD) repeats signature. 218 232 IPR019775 -
Cca03g01217 331 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 16 331 - -
Cca03g01217 331 SUPERFAMILY WD40 repeat-like 71 311 IPR036322 GO:0005515
Cca03g01217 331 Gene3D - 89 324 IPR015943 GO:0005515
Cca03g01217 331 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 234 - -
Cca03g01217 331 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 240 IPR001680 GO:0005515
Cca03g01217 331 Pfam WD domain, G-beta repeat 194 231 IPR001680 GO:0005515
Cca03g01217 331 PANTHER OS03G0386000 PROTEIN 16 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01217 Cca-Chr3 28939663 28944961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01217 118 311 Miscellaneous Gene Families AT5G08390 26.020 2.99e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01217 - - gmx:100775453 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01217 03 28939663 28944961 Cca03g01217 03 28939663 28944961 ECH