Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01209 ATGGCTGCTTTCCGCGCCGTGCTTCGTCACATACACATAAACGCCAACAACTGCTTCGCTCCACCGTCGAGTTTAGGTGCCACGTGGCAGTTTCTTATTCCCGCTAAACCCTCCAGAACAGTTAAATCCCGTGCTGGTTTAGACAACTACAAATTAGTGGTGAATAAAGACGAGCGTTTGGAGTGTGTCGACCAAATTGGGAGTGGCAGCGCCACCACGATTGCGGCCATCGTAACGTCCGTTGGAGGCCCCCCCGCCGCCGTTGGAATCGTTCGACTTTCGGGCCCTGCCGCAGTGTCTATTGCGGGCCGAGGGTTCAGGCCCACCAGGAAGACGTGGCGGCCCACCAGCCACGTCGTGGAATACGGCGTCGTGTTGGACTCCGAGGGAAATGTGATCGACGAGGTCCTTGCGGTGCCGATGCTTGCGCCGAGGTCGTACACTCGCGAAGACGTGGTTGAGCTTCAGTGCCACGGCAGTGAAGTGTGTCTGCGTCGCGTGCTGAGGAAGTGTTTGGAAGCCGGAGCAACGCTTGCTCAACCAGGCGAGTTCACTCTTCGCGCATTTCTTAACGGTCGTTTAGATCTCTCACAAGCCGAAAATGTTGCGAGATTAATCGCAGCTAAATCCGTGGCGGCTGCAGATGCTGCACTGGCTGGAATTCAGGCATATGGTGGTTTCTCATCTCTTGTTGGATCATTGAGGAGTCGGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCACCTCTGGATTTGAATTTGATTATGGATAAAATCAATAACATGTCACGAGATGTTGAAAGTGCATTGGAGACGGCAAATTATGACAAGCTTCTGCAATCTGGATTGCAGATTGCAATTGTTGGCCGCCCAAACGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCTGGTATCAGTGTCAGTGGCATTCCTATAAACCTTCTTGATACAGCAGGCATAAGGGATACTGATGACATTGTAGAGAAGATCGGCGTAGAGCGATCAGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTGTGAGTGCCGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTGCTAAGGGATCAACTGGATCATCCACCCCAGTAATCCTTGTGGTCAACAAGATAGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATGTCACAGTCATAATATTTTCAGTAAACATGTGTTTACATGTGCTGTCACTGGTCAAGGATTAGAAGAGCTAGAGAGGGCAGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGCAAGGTTACAATCATCAATAAAGGATGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCCGAAGAAGTTTTATCAAATATATTCGGCAAGTTCTGTATTGTGTATAATAAGTTTGGAAGGTGA 1635 0.482 MAAFRAVLRHIHINANNCFAPPSSLGATWQFLIPAKPSRTVKSRAGLDNYKLVVNKDERLECVDQIGSGSATTIAAIVTSVGGPPAAVGIVRLSGPAAVSIAGRGFRPTRKTWRPTSHVVEYGVVLDSEGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRKCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALAGIQAYGGFSSLVGSLRSRCIELLTEIEARLDFDDEMPPLDLNLIMDKINNMSRDVESALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEAGISVSGIPINLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKGSTGSSTPVILVVNKIDCKPCAETEWDKGCHSHNIFSKHVFTCAVTGQGLEELERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKDELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIVYNKFGR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01209 544 Pfam GTP-binding protein TrmE N-terminus 73 193 IPR018948 -
Cca03g01209 544 PANTHER TRNA MODIFICATION GTPASE GTPBP3 72 537 - -
Cca03g01209 544 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 72 537 - -
Cca03g01209 544 Pfam 50S ribosome-binding GTPase 292 413 IPR006073 GO:0005525
Cca03g01209 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 455 IPR027417 -
Cca03g01209 544 Gene3D - 291 467 IPR027417 -
Cca03g01209 544 Gene3D Probable tRNA modification gtpase trme; domain 1 60 193 IPR027266 GO:0005515
Cca03g01209 544 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 86 537 IPR004520 GO:0003924|GO:0005525|GO:0006400
Cca03g01209 544 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 290 460 IPR031168 -
Cca03g01209 544 CDD trmE 288 460 IPR031168 -
Cca03g01209 544 TIGRFAM small_GTP: small GTP-binding protein domain 291 422 IPR005225 GO:0005525
Cca03g01209 544 Hamap tRNA modification GTPase MnmE [mnmE]. 72 540 IPR004520 GO:0003924|GO:0005525|GO:0006400
Cca03g01209 544 Pfam MnmE helical domain 196 536 IPR025867 -
Cca03g01209 544 Gene3D tRNA modification GTPase MnmE domain 2 194 537 IPR027368 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01209 Cca-Chr3 28800570 28806016 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01209 K03650 - gmx:100779193 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01209 03 28800570 28806016 Cca03g01209 03 28800570 28806016 ECH