Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01200 ATGGGTTCATTTTTCAGTGTGGCGAATTCAAAATCTGACCAAATTGAAGGGAATGGGGTCTCTCCAAATGAGACATGTAAGAGGCAAAGAATGTCACCTGCTGTTGATGAAGAGAGTCCAAGACTAATTCCTCATCTCCCTGATGAGTTATCACTTCAGATTATTGCTAGACTTCCTAGAATTTGTTACTTCAGTGTAAGGCTGGTATCAAAGAAATGGAAGTCAACTATCATGAGTTCGGAACTATATAAAGTAAGAAAAGAACTTGGAACAACTGAAGAGTGGCTGTATCTGTTGATTAAGGTTGGAGAAAATAATCTTCTGTGGCATGCTTTAGATCCTCGTTCTAAGATATGGCAGAGAGTGCCTAATATGCCCAATTTGGTTAACGAAGAAGAATCTAGAAAACGTTCTTCTAGGCTTTGGATGTGGAACGTGGTGGAGGGTATCAGAATTGCTGAAGTTATTAGAGGCTTTCTTGGACAGAAGAATGCATTTGATGAAATGCCCTTTTGCGGTTGTGCAATTGGAGCTGTTGATGGATGTCTCTATGTTCTTGGTGGATTCTCTAAGGCTTCAACTATGAGAAGTGTCTGGCGATTTGATCCGATACAAAATATGTGGAGCAAGGTGACTTCTATGTCCACAGGTCGTGCATACTGTAAGACAGGCATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGACTGGTTCCACTCCAATCTGCTGAAGTTTTTGACCCTTCTACAGATACATGGTCGAATGTACCTAGTATGCCATTCTCTAGAGCTCAAGTCCTGCCTAGTGCTTTTTTGGCTGACATGTTAAAGCCTATTGCCACAGGACTGACCTCATACATGGGAAGGTTGTGTGTTCCACAAAGTCTCTATTCATGGCCTTTTTTTGTTGATGTTGGGGGAGAAATCTATGATCCTGAAACTAACTCATGGATAGAAATGCCAGTTGGAATGGGTGAGGGATGGCCTGCAAAGCAGGCAGGTACCAAATTGAGTGTTGTGGTGGATGGTGAATTATATGCTTTTGATCCTTCTAACTCTATGGATAGTGGGAGGATCAAGGTATATGATCAAGGTGAAGATGCATGGAAAGTAGTTATAGGAAAAGTGCCCATATATGATTATGCTGAATCAGAGTCCCCATATCTACTAGCTGGTTTCCATGGAAAGCTTCATGTCATTACCAAAGATGCCAATCATCATATTGCTGTTCTGCAGGCTTGCCTGCGCAATAATTTGGAGTCTTCACCTTCAGTGTCAACTCTGTCACAAAGTACATTGCATGAATCTCCAGAACTTGCTGCTGAATCAGATGCAGCAATTGTTTGGAGGGTAGTTGCCAACAGGGATTTTGGGCAGGCTGAACTAGTCAGTTGCCAAGTTATTGATATCTAG 1431 0.4186 MGSFFSVANSKSDQIEGNGVSPNETCKRQRMSPAVDEESPRLIPHLPDELSLQIIARLPRICYFSVRLVSKKWKSTIMSSELYKVRKELGTTEEWLYLLIKVGENNLLWHALDPRSKIWQRVPNMPNLVNEEESRKRSSRLWMWNVVEGIRIAEVIRGFLGQKNAFDEMPFCGCAIGAVDGCLYVLGGFSKASTMRSVWRFDPIQNMWSKVTSMSTGRAYCKTGILNNKLYVVGGVSQGQAGLVPLQSAEVFDPSTDTWSNVPSMPFSRAQVLPSAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWIEMPVGMGEGWPAKQAGTKLSVVVDGELYAFDPSNSMDSGRIKVYDQGEDAWKVVIGKVPIYDYAESESPYLLAGFHGKLHVITKDANHHIAVLQACLRNNLESSPSVSTLSQSTLHESPELAAESDAAIVWRVVANRDFGQAELVSCQVIDI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01200 476 Gene3D - 105 385 IPR015915 GO:0005515
Cca03g01200 476 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 3 476 - -
Cca03g01200 476 SMART kelc_smart 182 228 IPR006652 GO:0005515
Cca03g01200 476 SMART kelc_smart 229 279 IPR006652 GO:0005515
Cca03g01200 476 SMART fbox_2 46 86 IPR001810 GO:0005515
Cca03g01200 476 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Cca03g01200 476 SUPERFAMILY Kelch motif 95 406 IPR015915 GO:0005515
Cca03g01200 476 SUPERFAMILY F-box domain 39 86 IPR036047 GO:0005515
Cca03g01200 476 MobiDBLite consensus disorder prediction 1 38 - -
Cca03g01200 476 MobiDBLite consensus disorder prediction 1 28 - -
Cca03g01200 476 Pfam F-box-like 43 84 IPR001810 GO:0005515
Cca03g01200 476 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Cca03g01200 476 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Cca03g01200 476 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 3 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01200 Cca-Chr3 28572906 28575777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01200 36 264 Miscellaneous Gene Families AT4G33900 28.814 4.13e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01200 - - gmx:100806691 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01200 03 28572906 28575777 Cca03g01200 03 28572906 28575777 ECH