Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01199 ATGTCGAGGGTTACTAAGTGGAAGATTGAGAAGACAAAAGTAAAGGTGGTTTTCCGGCTCCAATTCCATGCCACACATATTCCACAATCTGGATGGGATAAATTGTTTATCTCTTTCATCCCTGCCGACTCTGGGAAGGCTACATCAAAGACAACCAAAGCAAATGTGAGAAATGGAACCTGCAAGTGGGCAGATCCAATCTATGAAACTACAAGACTCCTCCAAGACATTAAAACTAGACAATATGAGGAGAAGTTTTATAAACTTCTTGTGGGGATGGGTTCATCACGATCTAGCATCCTTGGCGAGGCCAACATTAATCTAGCTGATTTTGTTGATGCCTTGAAGCCAACAGCTGTTTCTTTGCCTCTTAATGGAAGTGAGACTGGAGTCATGCTACATGTCACAGTGCAGCTTCTCACTTCCAAAACTGGTTTCAGAGAATTTGAGCAGCAGAGGGAACTTAGAGAGAAGGGTCTACAGAACACCTCTGACCAAGGTACTCATGATGAATCTGCTGATAGCAAAGAGTCATCTCCTGACCAGAATGTCAATAATCATATTAATAAGGTTAATTCAAGAGTGAAATTGAAAAGAGAATCTAAAGATCTCCCCCGTATTTCTTCACTTGAAGGAGAATCAGGGGTAAATGAAGAGTATGCTGACTCAGCTGCTGGCTTTGATGGCTCATCTAGTACTTCTGGAAGCATATATACTGAAAAGCATGATATCTCCAGTACACATGAAGTGGACAGTCTTAAAAGCGCAGTCTCTGGTGATTTAGGTGGACTATCTCTTGGTCAAAGTCCTCAGCCAGAGAAGGGAGAGGCACCTGATAATCAGTTTCCCTCACAGGGAAGTGATTGGGTTCATGGTTGGAGCGTAGACTATTCAGCTGCTTCTGAAGATAGTAGCAGCAGCAAACTTAAGGGAAATCTGGCAGCAATTGAGTCATCTATTCTTGATCTAAAAGTGAAGGTAAGTTCTTTGCAAAACCATGCTGATGAAATAGGCGTTGAAACACTTAAGTTTTCTGGGCAACTTGCTACTGAGATTTCATCAGGAGAAGAGTTGGCAAAGGAGGTCACAGTACTAAAGTCAGAATGTTCAAAGTTTAGAGATGAGTTTGAGCAGCTTAAAAGTTCTAAGTTGAGATTGGCATTCACTCTCAAAGAACCTATTGATACAGATAGGGATAAATTATTTCAAAATTTACAGCATAAATGGATTAAGGGGCTTTTGCTCATGGAAGATAAGTTAAGAGATATTCAGAAGGTGTCTATGGGATTTCCTGACAGGGATTTTAGATTCCTTAACTTGGAGTTAGAAGCACTGGCTGTGATTTTGCAGAATCTCAAACAAGAATCAGGAGAACCAATTTCAGGGGCCAAAGCTGTCAATGAAAGAGAGAACAAGAAAAAGGATTTACATAAAAGTGAACAATTTTTAACAGATATTGGGTCTGATGCAGGTTTATTTCAACCCGAAAACATGAATCATTATCTTAGCATACCTGGCCTTGTGTCTAACGAGTTTGGTTCAGTTGATCCTACCCTTGCTATGAAAGAAAAAATCTTTGAACTTCTAAGAGAGCTGGATGAGTCCAAAACTGAGAGGGAAAGCCTTGTGCGTAAAATGGACCAGATGGAGTGCTACTATGAAGCTCTTATTCAGGAACTTGAGCAGAATCAAAGGCAGATGATGGCTGAGTTGCAGAACCTTAGGAATGAACATTCTACTTGCTTGTATACAATTTCTGCTGGTAAGACTGAGATGGAGAGAATGCACCAGAATATGAATGAGCAGATAATGAAATTTTCTGAAGACAATCGCATTTTGGAGTCTCTGAACAGTGAGTTTGAAAGAAGGGCTACTTCTGCAGAAGCAGCCCTTAAAAGGGCTAGATTGAACTATTCTATTGCCGTTGGTCAATTGCAAAAAGATCTTGAACTGCTTTCTTGCCAGGTTCTTTCTATGCATGAGACAAATGAGAATCTCATAAAGCAGACCCTTTCTGATTCTTCATATCCAAACACTGATGGTAGCCCAGAACCAGTGACATATCCAAAAAATTCAGAAGGTCATACTTCCAGTCGATTGCTAAGTCAAAACCACAGTTCTTCTTTACAAAGACAACATTTGGGTGAAGACATTTTACTTAGTGATTTGAAAAGATCACTTCAGTTGCAAGAGGGATTATACAGGCAGGTTGAAGAAGAAATCAGTCAAATGCATTTTGTAAATATATACTCAGATGTGTTTTCTAAGGCTTTGCAAGAAACATTGCTTGAAGCAAGTCTTGACATTCAACTCATGAAAGAGAAAATTGTTCAACTCTCCCAGCAGCTGGAGCTTACAAATGAATCCAATGAGTTACTGGTGTTGAGGTTGCAGAATGCTATGAATGACATTGTCTCGCTAAATGAGTACAAGGAGATTTGCACTGCAAAGAGCAATGATATTGCTCTCCAGAACCAAATTTTAGAGGCAAATTTAAAAGATCTTGTTCATGAAAACAATGTTCTTACTAAGAAAATTAATGAGCTGGAAGTTCTTCTAACAGAGTGTAGAAGTTTTGAGGACAAGTACATGGCATGCAGTACAGAAAACTCGGAATTGAAGAGTTTATTGAAAAAAGAGAGCCTAGAAAGTAATCATCTTCTCGGTGAAATATCCATTTTGCAAGAAGAGTTAAAATCTCTTGGAACTAAATTTGACGAGCAAGTTTCTATGAAGGATAATCTGCAGAATAATGTCATCTTTTTTTCTAATAAGTTGCAGAAATTGCTTGCATCATATGAAGAAAGACAAGGTGAACTTTCCCTTTGTAGTAGATCTGCCTGTATGGACTCAGAATGTGAAGACTTAGAAGGTCTCTTATTGCGACTAGAAGAGCTGCAACAGAGTGCGTTTCATAGAATCCTGCTACTCATTGAAGAGAAGGAGATTTTAGTGCATGAAAAACATATGGCTCACGTATCTTTAAATACTGCAGAATCAGATGTTCTAGTCATGAAACAGAAGTTTGAGCATGATTTGCAAGAGATGTTACATAAGATAAGTATGTCAGGTACTCTGTTGCAGAAACTTCAGTTAGATTTTGAGGTGATCATTGACAGGATTAATGCTGGTTTTGAAGCTGAAGAATTATATTCTCAGCATCACAAAGAATTTTTGTCTGGTCTGGATCATTTGGAAGCAGAGCTGCAACAGCTTAATTCCAGAAATCAGGACCTTGCTCAAGAAATAATAAAGCTAGATACTTCATCTAGTGACCTTGAAATGTGTAAGCTGACCTTGTTAACAATCATAGAGGAAAAGAAAGATTTGGAGTCATCTTTACAAGAAAAAACAGAAGAATCTGCCAAGATTTCATCCAAGCTTAATTCTTTGGAGAAGAGCTTGCATTCTCTGCACAATGAGTTGCATGCTGAGAAAACTGTCCGAGAGAAATTGGAGAAAACAGTTTCAGATCTTACAACAGATTTGAATGAGAAGCAAATCCAGCTGCAGGGAAAGAAAGATTTGGAGTTGTCTTTACAGGAAAAAATAGAAGAATCTGCTAAGATTTCATCTGAGTTTAATTCTTTGGAGAAGAACTTGCACTCTCTGCACAATGAGTTGCATGCTGAGAAAACTGTCAGAGAGAAATTGGAGAAAACAGTTTCAGATCTTTCCACAGAATTGAATGTGAGGCAAATCCAGCTGCAGGAAAAGAGAGATTTGGAGTCATCTTTACAGGAAAAAACCGAAGAATCTGCCATGATTTCATCTGAGCTTAATTCTTTGGAGAAGAACTTGCTTTCTCTGCATAATGAGTTGCATTCTGAGAAAACTGTCAGAGAGAAATTGGAGAAAACAGTTTCAGATCTTACCACAGAACTGAATGCGAAGCAAATCCAGCTGCAGGAAAAGAAAGATTTGGAGTTGTCTTTACAGGAAAAAAGAGAAGAATCTGTCAGGATTTCATCTGAGCTTAATTCCTTGGAGAAGAACTTGCATTCTCTGCACAATGAGTTGCATGCTGAGAAAACTGCCAGAGAGGAATTGGAGAAAACAATTTCAGATCTTACCACAGAATTGAATGAGAAGAAAATGCAGCTGCAGGAAAAGAAAGATTTGGCTTTGTCTTTACAGGAAAAAGCAGAAGAGTCTGCCAAGATTTCATCTGAGTTTAATTCTTTGGAAAAGAACTTGCATTCTCTGCATAATGAGTTGCATGCTGAGAAAACTGTCAGAGAGAAATTGGAGAAAACAATTTCAGATCTTACAGTAGAATTGAATGAGAAGCAATGTCAGCTTCAGGACTCAGATCTGAACAGACAAGAACTGATCCATCTGAAGCAAATGGTGACAGACTTAGAATTTGAAAAATCAAGAATCTCAGATCTTCAACTGAAATCTGAGGAACATCTTAAAGATGCTTTAAAACAATATTCTTCCATTAGTTGTCTGGAAACTCAGTTATCTGAAATGCATGAATTTTCTGCAGCTACAGATGTTGCTATGACTTATACAAGAGCTCAGTTTGAGGATCATATGGAGGAGCTTGCTGAGAAACTCCATTCTACTTGCAGGCAACTTGATGTGCTTCACAAGAAGAATCTTGATGTAGAATCTGAATTGGATGGATGTCTTTGCAGAGAACTGACTTGCATTAAAGAAAATACAAGATTGTTGACAAGTCTTGACTTCCTGAAATCTGAGTTAGAGGTCTTGACTGCTCAAAATAGAGCACTAATTGATCAAAACAGTGCAATGATGTCCGAGCTCAAGGAGCATGAGAGTAGGACAGAGAAGGTCAATGATACTTCTTATACTCATGAAAGACAGTGCATCCTTGAGGTTGAAAGGATGGAGCAATTGCTGGCAAGTTGTTGCAGAGATGCTGAAGAACTCTTCTTGTCCAAGGAAGAAGCTGAACTCAAGTGTATAGTTCTCCAGGACAAATTGGATGAACTGGAAACTGCATTCACTTCATTAAAACAATCAGACGATGAGCTGATAAGGCTGCAGAACCAATGTAATGAACTTACCAGGAGGCTTGCTGAACAGGTTTTGAAGACAGAGGAGTTTAAGAATTTGTCTATTCATTTTAAGGAACTAAAAGACAAAGCTGAGGCTGAGAGTCTAAATGCCCATGACAGAAGAGGACATGAAGGAGCACCGGTTGCTATGCAGGAGTCCTTGAGAATCGCATTTATCAAGGAACAATATGAATCAAAGTTGCAAGAACTAAGACAACAGCTGTCTTTGTCAAAAAAGCATAGTGAGGAAATGCTGTGGAAACTACAAGATGCAATTGATGAAACTGAGAATAGAAAAAAGTCTGAAGCTTCTCAAATAAAAATTAATGAAGAGTTGGGGATGAAGATTTTGGAATTGGAGGCTGAGCTACAGGCTGTAATTTCTGATAAACGCAATTTGTTAAATGCTTATGATCTTATAAAGGCTGAAAAAGAGTGTTCTGCAATAAGCCTTGAATGTTGTAAGCAAGAAAAGCAAGAGCTTGAAGCTTCACTTGTAAAATGCAATGAGGAGAAGTCCAAAATTGAAGTAGAGCTTACCTTGGCAAAGGAATTAGTTGAGACTTCAAAATCTCACGTGACTGCTCTGAATGAGGGCAATGGTGTATTCTCCTCTTCATTGAATCCTCAAGAAAAATCTACTCGTGAAGCTTGCAGTCATGAGCCAGAGAGTGCAAGTTTACTCGTCAATATGCAACCCAAGGATCCTCTTGCACCAAGTGTTATGAATGGATGCCAAACTCTTGGAACTGAAAAGGACTTGCACCAAGAAGAAGTAATGAAGCATGTGGCATCAACTGAAAGTTTGAAATCTATCATTGACCACTTGAATAAGGAGTTGGAAAGGATGAAAAACGAGAACATGCTTTCTTCAGTAGATGATCATAGTCATGAGTCAAGTTTTCCAGGGCTGCAAAGAGAACTGATGCAGCTACATGAGGCCAATCAAGAGTTAGGAAACATATTCCCTGTTTTTGATAAATTCTCTGTCAGCGGTAATGCATTAGAAAGGGTGCTTGCTTTGGAGATTGAGCTTGCTGAAGCGTTGCGGACCAAGAAGTCATCAAGCTTCCAATTTCAGAGTTCTTTCTTGAAACAGCACAGTGATGAAGAAGCAGTATTCCGAAGCTTCAGGGATATCAATGAGCTAATTAAAGATATGTTAGAACTAAAGACAAGACACTCTGCCGTGGAGACAGAACTGAAAGAGATGCATGATCGTTACTCTCAATTAAGTCTTCAATTTGCAGAGGTTGAAGGAACATTATTTCTATTTAAAACAATTTTGTGA 6318 0.3876 MSRVTKWKIEKTKVKVVFRLQFHATHIPQSGWDKLFISFIPADSGKATSKTTKANVRNGTCKWADPIYETTRLLQDIKTRQYEEKFYKLLVGMGSSRSSILGEANINLADFVDALKPTAVSLPLNGSETGVMLHVTVQLLTSKTGFREFEQQRELREKGLQNTSDQGTHDESADSKESSPDQNVNNHINKVNSRVKLKRESKDLPRISSLEGESGVNEEYADSAAGFDGSSSTSGSIYTEKHDISSTHEVDSLKSAVSGDLGGLSLGQSPQPEKGEAPDNQFPSQGSDWVHGWSVDYSAASEDSSSSKLKGNLAAIESSILDLKVKVSSLQNHADEIGVETLKFSGQLATEISSGEELAKEVTVLKSECSKFRDEFEQLKSSKLRLAFTLKEPIDTDRDKLFQNLQHKWIKGLLLMEDKLRDIQKVSMGFPDRDFRFLNLELEALAVILQNLKQESGEPISGAKAVNERENKKKDLHKSEQFLTDIGSDAGLFQPENMNHYLSIPGLVSNEFGSVDPTLAMKEKIFELLRELDESKTERESLVRKMDQMECYYEALIQELEQNQRQMMAELQNLRNEHSTCLYTISAGKTEMERMHQNMNEQIMKFSEDNRILESLNSEFERRATSAEAALKRARLNYSIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSYPNTDGSPEPVTYPKNSEGHTSSRLLSQNHSSSLQRQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFVNIYSDVFSKALQETLLEASLDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDIVSLNEYKEICTAKSNDIALQNQILEANLKDLVHENNVLTKKINELEVLLTECRSFEDKYMACSTENSELKSLLKKESLESNHLLGEISILQEELKSLGTKFDEQVSMKDNLQNNVIFFSNKLQKLLASYEERQGELSLCSRSACMDSECEDLEGLLLRLEELQQSAFHRILLLIEEKEILVHEKHMAHVSLNTAESDVLVMKQKFEHDLQEMLHKISMSGTLLQKLQLDFEVIIDRINAGFEAEELYSQHHKEFLSGLDHLEAELQQLNSRNQDLAQEIIKLDTSSSDLEMCKLTLLTIIEEKKDLESSLQEKTEESAKISSKLNSLEKSLHSLHNELHAEKTVREKLEKTVSDLTTDLNEKQIQLQGKKDLELSLQEKIEESAKISSEFNSLEKNLHSLHNELHAEKTVREKLEKTVSDLSTELNVRQIQLQEKRDLESSLQEKTEESAMISSELNSLEKNLLSLHNELHSEKTVREKLEKTVSDLTTELNAKQIQLQEKKDLELSLQEKREESVRISSELNSLEKNLHSLHNELHAEKTAREELEKTISDLTTELNEKKMQLQEKKDLALSLQEKAEESAKISSEFNSLEKNLHSLHNELHAEKTVREKLEKTISDLTVELNEKQCQLQDSDLNRQELIHLKQMVTDLEFEKSRISDLQLKSEEHLKDALKQYSSISCLETQLSEMHEFSAATDVAMTYTRAQFEDHMEELAEKLHSTCRQLDVLHKKNLDVESELDGCLCRELTCIKENTRLLTSLDFLKSELEVLTAQNRALIDQNSAMMSELKEHESRTEKVNDTSYTHERQCILEVERMEQLLASCCRDAEELFLSKEEAELKCIVLQDKLDELETAFTSLKQSDDELIRLQNQCNELTRRLAEQVLKTEEFKNLSIHFKELKDKAEAESLNAHDRRGHEGAPVAMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAIDETENRKKSEASQIKINEELGMKILELEAELQAVISDKRNLLNAYDLIKAEKECSAISLECCKQEKQELEASLVKCNEEKSKIEVELTLAKELVETSKSHVTALNEGNGVFSSSLNPQEKSTREACSHEPESASLLVNMQPKDPLAPSVMNGCQTLGTEKDLHQEEVMKHVASTESLKSIIDHLNKELERMKNENMLSSVDDHSHESSFPGLQRELMQLHEANQELGNIFPVFDKFSVSGNALERVLALEIELAEALRTKKSSSFQFQSSFLKQHSDEEAVFRSFRDINELIKDMLELKTRHSAVETELKEMHDRYSQLSLQFAEVEGTLFLFKTIL 2105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01199 2105 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 140 IPR019448 -
Cca03g01199 2105 PANTHER SPORULATION-SPECIFIC PROTEIN 1369 2096 - -
Cca03g01199 2105 Coils Coil 1281 1398 - -
Cca03g01199 2105 PANTHER SPORULATION-SPECIFIC PROTEIN 1177 1238 - -
Cca03g01199 2105 PANTHER SPORULATION-SPECIFIC PROTEIN 1303 1370 - -
Cca03g01199 2105 Coils Coil 1413 1433 - -
Cca03g01199 2105 Coils Coil 1563 1597 - -
Cca03g01199 2105 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1171 - -
Cca03g01199 2105 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1369 2096 - -
Cca03g01199 2105 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1237 1304 - -
Cca03g01199 2105 Coils Coil 617 637 - -
Cca03g01199 2105 MobiDBLite consensus disorder prediction 158 215 - -
Cca03g01199 2105 Coils Coil 1785 1812 - -
Cca03g01199 2105 Coils Coil 1100 1134 - -
Cca03g01199 2105 Coils Coil 1736 1774 - -
Cca03g01199 2105 Coils Coil 525 577 - -
Cca03g01199 2105 Coils Coil 1149 1169 - -
Cca03g01199 2105 Coils Coil 1827 1854 - -
Cca03g01199 2105 Coils Coil 949 969 - -
Cca03g01199 2105 Coils Coil 825 852 - -
Cca03g01199 2105 Coils Coil 435 455 - -
Cca03g01199 2105 Coils Coil 2056 2076 - -
Cca03g01199 2105 MobiDBLite consensus disorder prediction 257 285 - -
Cca03g01199 2105 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1177 1238 - -
Cca03g01199 2105 Coils Coil 1661 1688 - -
Cca03g01199 2105 Coils Coil 589 609 - -
Cca03g01199 2105 Coils Coil 720 740 - -
Cca03g01199 2105 Coils Coil 1055 1089 - -
Cca03g01199 2105 Coils Coil 1232 1266 - -
Cca03g01199 2105 MobiDBLite consensus disorder prediction 670 706 - -
Cca03g01199 2105 Coils Coil 1942 1962 - -
Cca03g01199 2105 Coils Coil 762 789 - -
Cca03g01199 2105 Coils Coil 1180 1200 - -
Cca03g01199 2105 MobiDBLite consensus disorder prediction 158 177 - -
Cca03g01199 2105 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Cca03g01199 2105 PANTHER SPORULATION-SPECIFIC PROTEIN 1 1171 - -
Cca03g01199 2105 PANTHER SPORULATION-SPECIFIC PROTEIN 1237 1304 - -
Cca03g01199 2105 Coils Coil 1637 1657 - -
Cca03g01199 2105 MobiDBLite consensus disorder prediction 193 207 - -
Cca03g01199 2105 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1303 1370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01199 Cca-Chr3 28555384 28568530 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01199 - - gmx:100807223 3148.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01199 03 28555384 28568530 Cca03g01199 03 28555384 28568530 ECH