Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01194 ATGAGCAATCTGAGAACCCTATGTAGACCTCAGACGGTATTCTCTTTCATTAGTTGCAGACACCAATTTCGTTCTAGGGTTTCGTTTCGGAACCCTAATTGCAAGTCGCGTTTGCCATCGCCGTCTCTGTATTCTACAATCGGTTATTGGGGCTCCAGTCCCTGGTTTCGCGCAAATCAGAGGAGAACTGTGGCCAAGGCGTCAAATTGGGCTGAACAGAAATCCCCATATGAAACTCTTGAATTGGAAGGAGATGCTGATGAGGAGCAGATAAAGAATGCTTACAGACGCTTAGCCAAATTTTATCACCCGGATGTCTATGATGGTAGAGGAACCCTTGAGGAAGGTGAAACAGCAGAAGCTAGGTTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGGGGAGAGCCGAAGAAAGTATGATATGGATAACCGGGTCAACCCTATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATTAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGACATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGTTAAACCTTCGTGTGCGTCAACTTTCTCGTTCGAAGATTGATCCAGATGAAACAAGGAGGATCCTGGCAAGAGAAAAGAAGGCTTCGGCTGAATATTACTCCAATACCCTTAAAAGGCACACACTTGTACTTAAGAAAAGAGATTTGATGCGAAGAAAGTCCGAGGAAGAAAAGAAGAAGGTAATCAGCCAGCTATTGGCAGCAGAAGGTCTCGAGCTTGATAATGATTCAGATAGTGATGACGCACTGTAG 810 0.4543 MSNLRTLCRPQTVFSFISCRHQFRSRVSFRNPNCKSRLPSPSLYSTIGYWGSSPWFRANQRRTVAKASNWAEQKSPYETLELEGDADEEQIKNAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLIDGESRRKYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRELNLRVRQLSRSKIDPDETRRILAREKKASAEYYSNTLKRHTLVLKKRDLMRRKSEEEKKKVISQLLAAEGLELDNDSDSDDAL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01194 269 CDD DnaJ 76 135 IPR001623 -
Cca03g01194 269 PRINTS DnaJ domain signature 77 95 IPR001623 -
Cca03g01194 269 PRINTS DnaJ domain signature 95 110 IPR001623 -
Cca03g01194 269 PRINTS DnaJ domain signature 118 138 IPR001623 -
Cca03g01194 269 PRINTS DnaJ domain signature 164 183 IPR001623 -
Cca03g01194 269 Gene3D DnaJ domain 59 160 IPR036869 -
Cca03g01194 269 ProSiteProfiles dnaJ domain profile. 75 146 IPR001623 -
Cca03g01194 269 PANTHER LD30543P 56 267 - -
Cca03g01194 269 PANTHER CO-CHAPERONE PROTEIN DJLA 56 267 - -
Cca03g01194 269 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Cca03g01194 269 SMART dnaj_3 74 138 IPR001623 -
Cca03g01194 269 SUPERFAMILY Chaperone J-domain 70 144 IPR036869 -
Cca03g01194 269 Pfam DnaJ domain 76 143 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01194 Cca-Chr3 28495133 28497795 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01194 - - gmx:100808285 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01194 03 28495133 28497795 Cca03g01194 03 28495133 28497795 ECH