Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01192 ATGGCAGAAAGTTGGGAAAGCATCGACGTGAAGCTGTCTCCGGCACCAGATCAAAGGATTCCGTTGATGAAATCAAGAAGAGGACGGCGGCGAGGCGACACCTGGGTGGTGTCGGTGTTCGTAATAATCGAAATCGGAGTTTTCATAGCCACCATGCTCGTCAACGATTGCTGGACCAATTCTCACGGCGATTGCATTCTCCAATCCCTCGGAAGGTTCTCCTTTCAGCCTCTCCCCGAGAATCCTCTCTTAGGTCCTTCCCGCTCCAAGTTGGATGAAATGGGAGCTCTTCGACGGAGCCTTTTGACGGAGCATCACCAAACGTGGCGTCTTTTCACATTTCCATTTTTGCATGCTGGACTCTTCCACCTGCTCCTCAATCTCTGCAGTGTCATCTACGTCGGAGTTCGCCTTGAGCACGAGTTTGGTCCCGCGAGGACTGGTATAATCTATGCATTATCTGCTTTTGTGGGTGCATTGGTGGCTTCTCTTTTTCTCCAAAACATCCCTGCTGTCGGTGCTTCCGGGGCTTTATTTGGATTACTAGGAACATTGCTTTCCGAAATTGTTTGGAACTGGAAATTTCATTCCAATAAGATTTCAGCAATAGCAACATTAGTCTTTGTCTTTGTGTGCAACTTCGTCATTGGTTTTCTGCCTTACGTAGACAATTTTTCAAGCATTGGAGGTTTTATATCAGGATTCCTTCTTGGATCTGTTTTTTTACTCAGTCCTCCGCTCCGACCACCAGTAGCTCCAAATAAAGGAGGTCTCATTGATTATGGTATCAAAAGTTACATCAAGTTAAAGTTGAAGCAAAAGCTGGACAGACCAGTTCTCAGGATTGTTTCTCTTGTCCTCTTCGGCCTATTATTGGCTGGTTGTCTTGTGGCGGTTCTTCATGGAATCAACATCAACAGTTATTGCACATGGTGTCCATATGTTGACTGTATCCCTTTTACAAGCTGGCACTGCAAAGACACAGAAACCTCTTGTGAGACAATGGTGAGCAATGCTCAGCTGACAATGACCTGTATTGGGAATGGCAATTTCCGGGTCTTTCCTTTTACCAATATCTCTCGGGCAAGGATTAATGATTTGTGCTATGTGATATGCTGA 1119 0.4567 MAESWESIDVKLSPAPDQRIPLMKSRRGRRRGDTWVVSVFVIIEIGVFIATMLVNDCWTNSHGDCILQSLGRFSFQPLPENPLLGPSRSKLDEMGALRRSLLTEHHQTWRLFTFPFLHAGLFHLLLNLCSVIYVGVRLEHEFGPARTGIIYALSAFVGALVASLFLQNIPAVGASGALFGLLGTLLSEIVWNWKFHSNKISAIATLVFVFVCNFVIGFLPYVDNFSSIGGFISGFLLGSVFLLSPPLRPPVAPNKGGLIDYGIKSYIKLKLKQKLDRPVLRIVSLVLFGLLLAGCLVAVLHGININSYCTWCPYVDCIPFTSWHCKDTETSCETMVSNAQLTMTCIGNGNFRVFPFTNISRARINDLCYVIC 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01192 372 Pfam Rhomboid family 104 243 IPR022764 GO:0004252|GO:0016021
Cca03g01192 372 PANTHER RHOMBOID-RELATED 14 372 IPR002610 GO:0004252|GO:0006508|GO:0016021
Cca03g01192 372 SUPERFAMILY Rhomboid-like 32 247 IPR035952 -
Cca03g01192 372 Gene3D - 30 243 IPR035952 -
Cca03g01192 372 PANTHER RHOMBOID-LIKE PROTEIN 8 14 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01192 Cca-Chr3 28479357 28482226 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01192 - - gmx:100793747 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01192 03 28479357 28482226 Cca03g01192 03 28479357 28482226 ECH