Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01190 ATGGACTCTCATCCGGGTCTATCTCTCGGGCTGAGCGCCCCTCTCTCGTCACCGGCAGCAACACTCTGTGATTCCTCTGTTCCGTGGCGGATATTCAATGAACGACGCGCCAaagaagaagaagaagaagaagaggaagaagaagGGAGCGAAACGATCAACTTCATGGACCAGCGCGTGAAGAGGAAGGCAGAGGGTCACCAACACTCGTGTTTCCCTTCGAAGCGCGTGGCGGTGGATTCCGCAGTGGGGTGGTGGAACCAGCCACTGGGCGTGGCGGACCCCGAGATTTTCGACATCATGGAGAAGGAAAAACGGAGACAGTTCAAGGGAATTGAATTGATCGCTTCGGAGAATTTCGTGTGCAGGGCAGTGATGGAAGCTTTGGGGAGCCATTTGTGCAACAAGTACTCTGAGGGAATGCCTGGTGCGAAATACTACACGGGTAATCAGCACATTGATGAGATTGAGTTTCTGTGTTGCCAGCGTGCGTTGGTGGCGTTTGATCTTCACCCTGGCAATTGGGGTGTTAATGTTCAACCGTATTCTTGTACTTCTGCTAACTTTGCTGTGTACACTGGGATTTTGCATCCCGGGGATAGGATAATGGGTTTGGATTCGCCTTCTGGGGGGCATTTGAGTCATGGTTATTATACCCTTGGGGGGAAGAAGGTTTCTGCGGCCTCTATTTTCTTTGAGACTTTGCCCTATAAGGTGAATCCGCAGACTGGTTATATTGACTATGATAAGCTTGAGGAGAAAGCCTTGGATTTTAGGCCCAAGATACTTATTTGTGGGGGGAGTTCGTACCCCAGGGAGTGGGATTATGCCAGGTTCAGGCAGGTTGCTGATAAGTGTGGAGCCGTGTTGATGTGTGACATGGCTCATATCAGTGGTCTTGTGGCGGCTAAGGAAGTAGCTAGTCCGTTTGACTACTGTGATATTGTTACCTCAACCACCCACAAAAGTCTCCGAGGTCCAAGGGGAGGCATCATCTTCTATAGAAGGGGGGCAAAACCAAGGAGGCAAGGTTTCGTCCATAATTATGGAGATGACAGTAATTATGATTTTGAGGAGAAAATAAACTTTGCTTTGTATCCATCATTACAAGGAGGCCCCCACAATAATCATATTGCTGCACTTGCCATTGCTTTTAAACAAGTTGCAACTCCAGAGTACAAAGCATACATGCAGCAGGTGAAGAGAAATGCACAGGCATTAGCCTCTGCCTTGTCGAGAAAAAATTGCAGATTAGTCACTGGTGGGACTGACAATCATCTGTTGCTATGGGATCTAACAGCACGTGGCTTAATTGACAGAAACTATGAGAAGGTCTGCGAGGCGTGTCACATCACTCTCAATAAATGTGCCATTTATGGTTCGATTTCTCCTGGAGGAGTGAGAATTGGTACTCCCGCAATGACATCAAGAGGCTGTTTAGAGGAAGACTTTGAGACCATAGCTGATTTTCTTCTGAGGGCAGCTCAGATTACCGGCAAGGTTCAAAGGGAACATGGGAAATCATACAAAGATTTTCTCAAGGGCCTTCAGAATAATAAAGAAATTTCTGATCTCAGAAATCGGGTTGAGACATTCAGCACCCAGTTTGCAATGCCAGGATTCGATATTTGA 1632 0.4663 MDSHPGLSLGLSAPLSSPAATLCDSSVPWRIFNERRAKEEEEEEEEEEGSETINFMDQRVKRKAEGHQHSCFPSKRVAVDSAVGWWNQPLGVADPEIFDIMEKEKRRQFKGIELIASENFVCRAVMEALGSHLCNKYSEGMPGAKYYTGNQHIDEIEFLCCQRALVAFDLHPGNWGVNVQPYSCTSANFAVYTGILHPGDRIMGLDSPSGGHLSHGYYTLGGKKVSAASIFFETLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQVADKCGAVLMCDMAHISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIIFYRRGAKPRRQGFVHNYGDDSNYDFEEKINFALYPSLQGGPHNNHIAALAIAFKQVATPEYKAYMQQVKRNAQALASALSRKNCRLVTGGTDNHLLLWDLTARGLIDRNYEKVCEACHITLNKCAIYGSISPGGVRIGTPAMTSRGCLEEDFETIADFLLRAAQITGKVQREHGKSYKDFLKGLQNNKEISDLRNRVETFSTQFAMPGFDI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01190 543 Pfam Serine hydroxymethyltransferase 92 490 IPR039429 -
Cca03g01190 543 PIRSF SHMT 61 543 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca03g01190 543 Hamap Serine hydroxymethyltransferase [glyA]. 89 540 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca03g01190 543 MobiDBLite consensus disorder prediction 36 55 - -
Cca03g01190 543 SUPERFAMILY PLP-dependent transferases 85 540 IPR015424 -
Cca03g01190 543 Gene3D Aspartate Aminotransferase, domain 1 94 539 IPR015422 GO:0003824
Cca03g01190 543 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 67 543 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca03g01190 543 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 314 330 IPR019798 GO:0030170
Cca03g01190 543 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 67 543 - -
Cca03g01190 543 MobiDBLite consensus disorder prediction 1 21 - -
Cca03g01190 543 CDD SHMT 94 501 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca03g01190 543 Gene3D - 119 398 IPR015421 GO:0003824
Cca03g01190 543 ProSiteProfiles Cytochrome c family profile. 431 533 IPR009056 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01190 Cca-Chr3 28448687 28454290 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01190 K00600 - gmx:100776419 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01190 03 28448687 28454290 Cca03g01190 03 28448687 28454290 ECH