Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g01189 | ATGGCCACTTTTCTCTCTAATCAATCTCTGTTGGGTTCTTGTCCTTGTTCTACACCCTTCTCTTCAAAACCCTTTCAAACCCTAAAATCCCCAATCCTATCTTTTCCATCTCGCCCTTTTCCTCCCGCCCTAATTTCCTCTCTCAATCGAACACCCCACTTCAAGTCTTCCCCAAATCCCCCTCCAACTACAAATGATGAAACAGAGGAGACTCAGAATGATGTAAGAGAGGCAGGTGGTGATGAAGATGAAAAACCATTACCCAGTTTAATGGTCCTCGTAGAAGAATACAAGGAAGCTCTTTTTAATGGCGACGAAAATTCTGTAGCTCATATTGAAGAGGGAATATACTCAATTGCAAATAGAAAAAATGAATTGGTTCAGAGAGCTTCAACTTTATTAGCAGAGAAAGCTGCTTCCAAGGAGAGATATCTTCGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGGACAGATAAAGAGAGACTTAACATCCAATCTGAGGCCCAACAAAAAGTCGTTGAAAAGCTCTTGTTGATGGTGGACAGTTTTGAGAGAACCAAACAGCAAACTAAAGCGGCAACAGAGAAAGAGAAGAAGATTGATGTTAGCTATCAAGGTATTTACAAGCAATTTGTAGAGGTTCTGAGGAGTCATCACGTTTCAGTGGTAGCAACAGTGGGCAAGCCGTTTAATCCTTTGCAACATGAAGCCATTGCCCGTGAGGAGTCCACAGAGTTCAAGAAAGGGATTATAATTAAAGAATCCCGACGTGGCTTTATGCTCAGAGATAAAGTTCTAAGGCCAGCCCTTGTGAAGGTTTCCTTAGGTCCTGGAAATAAGGAATCTCCCGTGTCTCCTGACAAGTCCACGGGGCAACCTTCAACAGCTGCTGGAATAGATGAAAGATAG | 912 | 0.42 | MATFLSNQSLLGSCPCSTPFSSKPFQTLKSPILSFPSRPFPPALISSLNRTPHFKSSPNPPPTTNDETEETQNDVREAGGDEDEKPLPSLMVLVEEYKEALFNGDENSVAHIEEGIYSIANRKNELVQRASTLLAEKAASKERYLRLQADFDNFRKRTDKERLNIQSEAQQKVVEKLLLMVDSFERTKQQTKAATEKEKKIDVSYQGIYKQFVEVLRSHHVSVVATVGKPFNPLQHEAIAREESTEFKKGIIIKESRRGFMLRDKVLRPALVKVSLGPGNKESPVSPDKSTGQPSTAAGIDER | 303 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g01189 | 303 | SUPERFAMILY | Coiled-coil domain of nucleotide exchange factor GrpE | 124 | 219 | IPR013805 | - | |
| Cca03g01189 | 303 | MobiDBLite | consensus disorder prediction | 49 | 68 | - | - | |
| Cca03g01189 | 303 | CDD | GrpE | 141 | 274 | IPR000740 | GO:0000774|GO:0006457|GO:0042803|GO:0051087 | |
| Cca03g01189 | 303 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
| Cca03g01189 | 303 | Gene3D | - | 117 | 218 | IPR013805 | - | |
| Cca03g01189 | 303 | MobiDBLite | consensus disorder prediction | 44 | 86 | - | - | |
| Cca03g01189 | 303 | MobiDBLite | consensus disorder prediction | 275 | 303 | - | - | |
| Cca03g01189 | 303 | ProSitePatterns | grpE protein signature. | 231 | 274 | IPR000740 | GO:0000774|GO:0006457|GO:0042803|GO:0051087 | |
| Cca03g01189 | 303 | PANTHER | GRPE PROTEIN | 1 | 293 | IPR000740 | GO:0000774|GO:0006457|GO:0042803|GO:0051087 | |
| Cca03g01189 | 303 | Hamap | Protein GrpE [grpE]. | 65 | 276 | IPR000740 | GO:0000774|GO:0006457|GO:0042803|GO:0051087 | |
| Cca03g01189 | 303 | Pfam | GrpE | 121 | 275 | IPR000740 | GO:0000774|GO:0006457|GO:0042803|GO:0051087 | |
| Cca03g01189 | 303 | PANTHER | GRPE PROTEIN HOMOLOG | 1 | 293 | - | - | |
| Cca03g01189 | 303 | PRINTS | GrpE protein signature | 145 | 161 | IPR000740 | GO:0000774|GO:0006457|GO:0042803|GO:0051087 | |
| Cca03g01189 | 303 | PRINTS | GrpE protein signature | 173 | 188 | IPR000740 | GO:0000774|GO:0006457|GO:0042803|GO:0051087 | |
| Cca03g01189 | 303 | PRINTS | GrpE protein signature | 228 | 243 | IPR000740 | GO:0000774|GO:0006457|GO:0042803|GO:0051087 | |
| Cca03g01189 | 303 | PRINTS | GrpE protein signature | 255 | 274 | IPR000740 | GO:0000774|GO:0006457|GO:0042803|GO:0051087 | |
| Cca03g01189 | 303 | SUPERFAMILY | Head domain of nucleotide exchange factor GrpE | 222 | 276 | IPR009012 | GO:0006457 | |
| Cca03g01189 | 303 | Gene3D | Head domain of nucleotide exchange factor GrpE | 221 | 275 | IPR009012 | GO:0006457 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g01189 | Cca-Chr3 | 28432470 | 28435532 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g01189 | K03687 | - | gmx:100809893 | 484.567 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca03g01189 | 03 | 28432470 | 28435532 | Cca03g01189 | 03 | 28432470 | 28435532 | ECH |