Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01183 ATGGAAAACGCCGACGTTTTCTTGGGCTTACACGACTTCCTCGAGCGCATGCGGCAACCCTCCGCCGCTGAATTCGTCAAAGCCATCAAAAGTTTTATCGTTTCGTTTTCGAACAATGCTCCCGATCCTGATAGGGACAGTGCCGCGGTTCAAGCGTTTCTTGCCAAAATGGAAGCGGATTTCAAGGCTCATCCCCTTTGGGCTGGTTGCTCTGAGGAGGAGCTCGAAAGTGCCGGTGAAGGGCTTGAGAAGTATGTTATGACAAAGTTATTTGCTCGTGTATTTGCTTCACTTCCAGATGATGTAAAACTTGATGACCAACTTTCTGAGAAGATGGCTTTAGTTCAACAATTTATTCGACCTGAAAATTTGGATATCAAGCCAGTATTTCAGAATGAATCATCGTGGTTGCTTGCACAGAAAGAATTACAGAAGATCAACATGTACAAGGCACCCAGGGACAAACTTGTCTGTATTTTGAATTGTTGCAAGGTTATTAGTAACTTGCTGATTAATGCTTCACTTGCTTCCCAAGAGAATCCTTTTGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCATAAAGGCAAACCCCCCACAACTGCACTCAAATCTACTGTACATACAACGGTTTAGACATCAATCTCGACTGGTTGCAGAAGCAGCATATTATTTTACAAACATGCTATCTGCTGAGTCGTTCATTTCAAGCATCGATGCCAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGAGAAACATGGAATTTGCTCGTGCTATGCTTTCGGGCATTTCAGCTGATACGCAAGATCCTGGCTCACCTTATCAGAATAACGGACAACTTCCAAGAGCAGAACCCACCAAGCACAAAAGTAAAGCTTTGAATAATAATAAGGACACTGCACTACAAACTCCATCATCTGTTGCAAAATCAGATATCAAGAAAGTGACTTCTGCAGATGAATTATTGATCACAAAAGTTCCATCCCTCTCGGATTTGGAGAATAAAGGGGCAAGTATGATTTTGAAGGAGGATAAGTTGAATGAAGTTTTTGGGGAGTTTCCATATTTATTTGCTAGTGTAGGTGACCTAACAGTAGGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCGCTTTCCATGGGTTTAGGCATCTCTCCTACATCGAATCCACCATCAAATCCCCATAACATCGCTGAAGAAGATCACGCTGTAACCACAAATCCCCAAAACAACTCTGAAGAAGATCATGCCGAAACTACAATAGATTCTTCAGATGGTGGACCTCTGGATGCAACAGAGTATAGTTCTGATAAAGTTTCACTTATTGAGGAGAAAAAAATTGAATCTGATCCGCCACGGGATGAGCCAGTTGCTCCTGAGAGTGATGCTCCCTCTTAA 1428 0.4188 MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSAAVQAFLAKMEADFKAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASLPDDVKLDDQLSEKMALVQQFIRPENLDIKPVFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVISNLLINASLASQENPFGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISSIDAKAISMDEAEFERNMEFARAMLSGISADTQDPGSPYQNNGQLPRAEPTKHKSKALNNNKDTALQTPSSVAKSDIKKVTSADELLITKVPSLSDLENKGASMILKEDKLNEVFGEFPYLFASVGDLTVGDVEDLLNNYKQLVFKYVSLSMGLGISPTSNPPSNPHNIAEEDHAVTTNPQNNSEEDHAETTIDSSDGGPLDATEYSSDKVSLIEEKKIESDPPRDEPVAPESDAPS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01183 475 Gene3D - 17 97 - -
Cca03g01183 475 Gene3D VPS9 domain 99 265 IPR037191 -
Cca03g01183 475 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Cca03g01183 475 SMART vps9_2 135 254 IPR003123 -
Cca03g01183 475 PANTHER BNAC09G47180D PROTEIN 1 410 - -
Cca03g01183 475 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Cca03g01183 475 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Cca03g01183 475 MobiDBLite consensus disorder prediction 269 311 - -
Cca03g01183 475 MobiDBLite consensus disorder prediction 447 467 - -
Cca03g01183 475 MobiDBLite consensus disorder prediction 269 286 - -
Cca03g01183 475 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 410 IPR045046 GO:0005085|GO:0016192
Cca03g01183 475 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Cca03g01183 475 MobiDBLite consensus disorder prediction 415 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01183 Cca-Chr3 28328585 28336145 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01183 K20131 - gmx:100810958 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01183 03 28328585 28336145 Cca03g01183 03 28328585 28336145 ECH