Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01170 ATGTACGAGGGAGAGTGGAAGCGAGGGAAGGCCTGGGGGAAGGGAAAATTCTCGTGGCCCTCCGGCGCCACCTACGAGGGGGAATTCAAATGGGGTCGGATGGAGGGGTTGGGGACATTCACGGGATCGGAGGGCGACACGTATCGCGGGTCCTGGAGCTCCGATAGGAAGCAGGGGTACGGGCAGAAGCGGTACGCCAACGGGGATTTCTACGAGGGGTGTTGGAAGAGGAACGTGCAGGAGGGGGAGGGGAGGTACGTGTGGAGGAACGGGAACGAGTACTACGGGGAGTGGAAGAACGGCGTCATCTGTGGCAGGGGTACCCTCATTTGGGCCAATGGGAACCGCTACGAGGGCCACTGGGAGAACGCCGTCCCCAAGGGCCAGGGTGTTTTCACTTGGCCCGACGCCAGCTCCTATGTTGGCTGCTGGAGCAAGGACCTGAACCTGCACCTCCTCCACGGCACTTTTTACCCTGCCCCTGGGCCCCCCTCTCTCAGCAACACCTCCTCCTTCCACTTCGACTCTGCCAGACCCAGGATTTGCATCTGGGAATCCCAGGGTGAAGCCGGGGATATCACCTGTGACATAATCGATAATGTCTCCTTGCTCTACCGTCACGGAACTCCAACCTCAACCATCTCAGATCGCCAACATGTTAAGCCCTTTCGCCGGATTCCTTCTGCCGAGGTCAAGAGGCCGGGCCAGACTATATCCAAGGGCCACAAGAATTATGATCTCATGCTTAATCTGCAATTGGGTATAAGGTACTCTGTCGGGAAGGAAGCCTCCTTTTCGCGACAGCTTAAGCCTGCTCATTTTGATCCCAAGGAGAAGTTCTGGACAAGGTTTCCCGCTGAAGGATCTAAGATTACTCCACCGCATCAATCCTTGGAGTTCCGCTGGAAGGATTACTGCCCTATGGTTTTTAGGCAATTGAGGAAGCTGTTTCAGGTGGATCCTGCTGATTACATGTTAGCTATATGTGGGAATGATGCCCTCAGGGAGCTTTCCTCTCCAGGGAAAAGTGGAAGCTTCTTTTACTTGACCCAGGATGACAGATTTATGATAAAGACGGTGAAGAAATCTGAAGTCAAGGTGCTTATTCGGATGCTTCGAAGCTATTACCAACATGTTTCTAAATACGAGAATTCACTTGTCACAAAATTCTATGGGGTACACTGTGTCAAACCAATTGGAGGCCAGAAGACGCGCTTTATTGTGATGGGCAATCTTTTCTGCTCTGAATATCCGATCCATAGACGATTTGACTTGAAGGGATCTTCACATGGCCGTACAACAGATAAGACCCAGGAGGAAATTGATGAAACTACCACCCTCAAGGACTTGGATCTCAATTTTGTGTTTCGTCTTCAAAAAGATTGGTTCCAGGATCTCATCAAACAAATTGAGCGGGATTGTGCGTTCTTGGAGGCTGAGGGAATTATGGATTACAGTCTTTTAGTTGGCCTTCATTTTCGTGATGATAACACCTATGAAAAAATGGGATTGTCCCCCTTTCTTTTGCGCAACGGGAAGTGGGATTCTTATCAGAGTGAAAAGTTCATGCGTGGTTACCGCTTTCTTGAAGCAGAGCTGCAGGATAGGGATCGAGTTAAATCTGGCCGGAAATCATTGATTAGGTTAGGAGCCAATATGCCTGCAAGAGCTGAGCGCATGGCGCGTAGGAGTGATTTTGATCGATACACCCCTTGTTGCAGTGGGGAAACTTACGATGTTGTTTTATATTTTGGGATTATTGACATTTTGCAAGATTACGATATCAGCAAGAAACTGGAGCATGCTTACAAGTCCTTTCAGGTTGACCCTTCATCAATCTCAGCTGTTGATCCAAAGCTCTACTCAAAAAGGTTCCGGGATTTTGTGGGTAGAATATTCATCGAAGACTGGTAA 1914 0.4963 MYEGEWKRGKAWGKGKFSWPSGATYEGEFKWGRMEGLGTFTGSEGDTYRGSWSSDRKQGYGQKRYANGDFYEGCWKRNVQEGEGRYVWRNGNEYYGEWKNGVICGRGTLIWANGNRYEGHWENAVPKGQGVFTWPDASSYVGCWSKDLNLHLLHGTFYPAPGPPSLSNTSSFHFDSARPRICIWESQGEAGDITCDIIDNVSLLYRHGTPTSTISDRQHVKPFRRIPSAEVKRPGQTISKGHKNYDLMLNLQLGIRYSVGKEASFSRQLKPAHFDPKEKFWTRFPAEGSKITPPHQSLEFRWKDYCPMVFRQLRKLFQVDPADYMLAICGNDALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLIRMLRSYYQHVSKYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSEYPIHRRFDLKGSSHGRTTDKTQEEIDETTTLKDLDLNFVFRLQKDWFQDLIKQIERDCAFLEAEGIMDYSLLVGLHFRDDNTYEKMGLSPFLLRNGKWDSYQSEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERMARRSDFDRYTPCCSGETYDVVLYFGIIDILQDYDISKKLEHAYKSFQVDPSSISAVDPKLYSKRFRDFVGRIFIEDW 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01170 637 Gene3D - 4 54 - -
Cca03g01170 637 Gene3D - 55 100 - -
Cca03g01170 637 Gene3D - 101 156 - -
Cca03g01170 637 SUPERFAMILY SAICAR synthase-like 240 633 - -
Cca03g01170 637 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 2 101 - -
Cca03g01170 637 SMART PIPK_2 270 634 IPR002498 GO:0016307|GO:0046488
Cca03g01170 637 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 230 411 IPR027484 -
Cca03g01170 637 Pfam MORN repeat 94 116 IPR003409 -
Cca03g01170 637 Pfam MORN repeat 48 69 IPR003409 -
Cca03g01170 637 Pfam MORN repeat 25 47 IPR003409 -
Cca03g01170 637 Pfam MORN repeat 71 92 IPR003409 -
Cca03g01170 637 Pfam MORN repeat 2 23 IPR003409 -
Cca03g01170 637 Pfam MORN repeat 117 136 IPR003409 -
Cca03g01170 637 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 1 636 - -
Cca03g01170 637 Gene3D - 412 633 - -
Cca03g01170 637 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1 636 IPR023610 -
Cca03g01170 637 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 329 631 IPR002498 GO:0016307|GO:0046488
Cca03g01170 637 SMART morn 92 113 IPR003409 -
Cca03g01170 637 SMART morn 46 67 IPR003409 -
Cca03g01170 637 SMART morn 23 44 IPR003409 -
Cca03g01170 637 SMART morn 1 21 IPR003409 -
Cca03g01170 637 SMART morn 69 90 IPR003409 -
Cca03g01170 637 SMART morn 115 136 IPR003409 -
Cca03g01170 637 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 239 633 IPR002498 GO:0016307|GO:0046488
Cca03g01170 637 CDD PIPKc_AtPIP5K_like 244 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01170 Cca-Chr3 28043327 28046607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01170 1 636 Acyl Lipid Metabolism Gene Families AT1G77740 72.755 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01170 K00889 - gmx:100813118 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01170 03 28043327 28046607 Cca03g01170 03 28043327 28046607 ECH