Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01169 ATGCATCCTTTCTGCTGCGTGTCCGCCATTTCCGACCAGGCCTCGCCAGTCAAACCCTCCTTCACGGACTTCGCCATgccgcctctccctgccgcctccgccgccgccgtcgcGAGATCCGATTCGGTTCCGCGGCACAGCCACAAGAACAGCCTGAGCGGGAGTCAGCGGGAGCAGCCGGTGGACGTGAAGATCAACGACCTCGTCGGTAACGGAATCTCCGGAATACTCCACAAGTGGGTGAATTACGGCAAAGGATGGCGACCTCGATGGTTCGTGCTCCAAGACGGCGTTCTCTCCTACTACAAGATTCACGGACCTGATAAGATCGTCGTGAATCCCGAAACCGAGAAAGGCTCCATGGTTATCGGCGAAGAATCCATGCGCAGGATCACTCGCAACCGCAATTCATATCCCTGCCAGCACCGACGCAAGCCGTTTGGGGAAATCCATCTCAAGGCACGACCTAGTGACCTAGCTCTACTCTTCGTTTCGTCGATTCGCGAGAGCAAATCGGACGACAAGCGGTTTTCGGTTTTCACCGGAACGAAGAGGCTCCACCTGAGGGCGGAGACACGTGAGGATCGTGTGGCGTGGGTGGAGGCGTTGCAGGCGGTGAAGGACATGTTCCCGCGGATGTCGAACAGCGAGTTGATGGCTCCGGTGGACAATGTGATCGTTTCGACGGAGAAACTGAGACTTCGGCTTTTGGAAGAGGGAGTGAGCGAGGCTGCCATTCAGGACAGTGAGCAAATCATGAGGAGTGAGTTTGCGGCGCTGCAAAACCAGCTTGTGCTGCTTAAGCAGAAGCACTCCATCCTCATTGACTCCTTGCGCCAATTAGAGACAGAAAAGGTTGATCTGGAGAATACAGTAGTTGACGAGAGCCAAAGACAGTGGAATGATGAAGAGGCTTCCTCAAGATCAGCGCAAGAAAAATTTAGTGAAGGAACTGCTAGtgaatctgaagatgacaatgagagaaatgatgctgcagaggaagaaacagatgatgatgaCAACGCCTTTTTTGATACACGTGATATTCTATCATCCAGTTCTTTTAAAAGTAATGGGTCAGATTATCGAGTATCATCCTTCTCTTCAGATGATGAAGGGTTCTATGCATTTGAATCAGAGGATGACGTAGATCCGACAATTAGACATGTTGGAACCAATTACCCTCATGTTAAGCGGCGTAAGAAATTGCCAGACCCTGTAGAAAAAGAGAAGGGTGTCAGTCTTTGGTCAATGATTAAGGATAATATAGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAATGAACCTCTTTCCTCCCTGCAAAAATGTTTTGAAGAAATGGAGTATTCATATCTGCTGGACCAAGCATATGAATGGGGAAGAAGGGGTAACAGCCTCATGAGGATTCTCTACGTTGCGGCTTTTGCTGTATCTGGCTATGCTTCCACTGAAGGAAGAGTTTGCAAACCATTTAATCCATTACTTGGGGAAACATACGAAGCTCACTACCCAGATAAAGGCCTTCGTTTTTTCTCAGAGAAGGTCAGTCATCACCCTATGATTGTCGCATGTCACTGTGAGGGCACAGGTTGGAAATTTTGGGGAGATAGCAACCTAAAGAGCAAATTTTGGGGGAGATCAATTCAGCTTGACCCTGTTGGTACTTTGACTTTGGAATTTGATGATGGGGAGGTTTTCCAGTGGAGCAAGGTTACTACATCAATATACAATCTCATATTGGGAAAGCTATACTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGTACTCGTGTAAACTGAAGTTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGGTTCATGGTATCATTCAAGATAGGAACGGAAAAACTGTATCAACTTTGTTTGGAAAATGGGATGAGAGCATGCATTATGTTAACGGAGACTACACTGGGAAAGGGAAAGGTCATGAATCTTTGTCAGATGCCCATTTACTCTGGAAGCGAAGCAAGGCTCCCAAGTTTCCCACTAGATATAACTTCACACGCTTTGCCATTACATTAAACGAACTGACCCCTGGATTGAAGGAGAAGTTGCCACCTACAGATTCAAGGTTAAGACCAGACCAAAGGTATTTGGAAAATGGGGAGTATGACATGGCAAATTCAGAAAAGTTACGGCTAGAGCAGCGACAGCGCCAGGCTCGGAAGATGCAAGAAAGTGGGTGGAAACCACGGTGGTTTGCTAAGGATAAAGCGAGCGGGACATACCGCTATATAGGAGGGTATTGGGAGGCCAGACAACGAGGAAACTGGGATTCCTGCCCCGACATCTTTGGCCAAATTCCTTCCGATCATATTTCTGACCAAGCTCAAATTACATTTTAG 2391 0.4525 MHPFCCVSAISDQASPVKPSFTDFAMPPLPAASAAAVARSDSVPRHSHKNSLSGSQREQPVDVKINDLVGNGISGILHKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNPETEKGSMVIGEESMRRITRNRNSYPCQHRRKPFGEIHLKARPSDLALLFVSSIRESKSDDKRFSVFTGTKRLHLRAETREDRVAWVEALQAVKDMFPRMSNSELMAPVDNVIVSTEKLRLRLLEEGVSEAAIQDSEQIMRSEFAALQNQLVLLKQKHSILIDSLRQLETEKVDLENTVVDESQRQWNDEEASSRSAQEKFSEGTASESEDDNERNDAAEEETDDDDNAFFDTRDILSSSSFKSNGSDYRVSSFSSDDEGFYAFESEDDVDPTIRHVGTNYPHVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSYLLDQAYEWGRRGNSLMRILYVAAFAVSGYASTEGRVCKPFNPLLGETYEAHYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGTLTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQEYSCKLKFKEQSIIDRNPHQVHGIIQDRNGKTVSTLFGKWDESMHYVNGDYTGKGKGHESLSDAHLLWKRSKAPKFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYDMANSEKLRLEQRQRQARKMQESGWKPRWFAKDKASGTYRYIGGYWEARQRGNWDSCPDIFGQIPSDHISDQAQITF 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01169 796 CDD PH_ORP_plant 73 215 - -
Cca03g01169 796 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 786 IPR000648 GO:0008289
Cca03g01169 796 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 786 - -
Cca03g01169 796 Gene3D - 72 217 IPR011993 -
Cca03g01169 796 Gene3D - 500 679 - -
Cca03g01169 796 MobiDBLite consensus disorder prediction 326 342 - -
Cca03g01169 796 Pfam Pleckstrin homology domain 78 204 - -
Cca03g01169 796 SMART PH_update 71 210 IPR001849 -
Cca03g01169 796 Gene3D - 711 772 - -
Cca03g01169 796 ProSiteProfiles PH domain profile. 70 208 IPR001849 -
Cca03g01169 796 Coils Coil 271 298 - -
Cca03g01169 796 SUPERFAMILY Oxysterol-binding protein-like 409 791 IPR037239 -
Cca03g01169 796 MobiDBLite consensus disorder prediction 297 343 - -
Cca03g01169 796 MobiDBLite consensus disorder prediction 36 59 - -
Cca03g01169 796 SUPERFAMILY PH domain-like 73 208 - -
Cca03g01169 796 Pfam Oxysterol-binding protein 414 768 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01169 Cca-Chr3 28013294 28019008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01169 K20456 - gmx:100137077 1466.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01169 03 28013294 28019008 Cca03g01169 03 28013294 28019008 ECH