Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01165 ATGATCTCTGTGTATGCAAAATGTTCCCATTTCGACGATGCACAAACCCTTTTCGACGAAATGCCTCACAGGAACATAATTTCCTACACAACAATGGTCTCTGCATTCACCAATTCTGGGAGGCCCCATGAGGCTCTCACACTATACAACCACATGCTGGAATCCAGAACAGTGCAACCCAATCAGTTCCTGTACTCTGCGGTTCTCAAGGCATGTGGTCTCGTGGGTGATGTTGAATTGGGCAGGTTGGTTCACCGACATATATCTCAAGCTAAGTTGGAGTTTGACACTGTTCTGATGAATGCCCTCTTGGACATGTACGTCAAATGTGGGAGCTTGAGGGATGCAAAGCGAGTTTTCCATGAAATTCCGTGTAAAAATTCCACCTCATGGAACACCCTCATTCTTGGACATGCTAAAGAGGGTTGCATGAGGGATGCGTTGAATCTGTTTGATCAAATGCCAGAACCAGACCTTGTGTCTTGGAACAGCATCATTGCTGGTCTTGCAGATAATGCTAGCCCCCATGCTTTGCATTTTGTTTCTATGATGCACGTGAGGGGCCTTAAACTTGATGCATTCACATTCCCATGTGCCCTCAAAGCGTGCAGTCTTTTTGGCGAGTTAACCATGGGGAGACAAATTCATGGCTGTATTATCAAGTCAGGGTTTGAGTGTAGCTGTTATTGTATATCAGCATTGATTGATATGTATTCGAATTGCAAGCTATTGGATGAAGCGATGAAGATATTTGATAAGAACTCTCCTCTTGCTGAAAGCTTGGCAGTATGGAATTCCATGCTTTCTGGGTATGTTGCCAATGGAGATTATGTGAAGGCTCTCAGTCTGATTGCTTGTATGCATCATTCTGGTGCACTGTTTGATTCCTATACCTTTAGTATTGCTTTAAAGGTCTGCATCTATTTTCATAACTTAAGATTGGCGTCTCAAGTGCATGGATTGGTCATCACAAGTGGCTATGAGTTAGATTATGTTGTTGGTAGCATTCTTATTGATCTATTTGCTAAACAGGGAAATATTAACTATGCATTAAGATTGTTTGAAAGCTTGCCGGATAAAGATGTTGTGTCTTGGTCAAGTTTGATTGCTGGTTGTGCTAGATTTGGTTCAGGAACATTAGCTTCTTCCCTCTTTATGGATATGGTTCATTTGGATCTTGAGATTGATCATTTTGTCCTTTCAATCGTTCTGAAAGTTTCTTCAAGTTTGGCATCACTTCAAAGTGGCAAGCAAATTCATTCTTTCATTCTTAAGAAGGGGTATGAATCAGAGGGAGTTATTACAACTGCTCTTATTGATATGTATGCAAAATGTGGTGAGATTGAGGATGCCTTAGCTTTGTTTCATTGTCTTTCTGAAATAGATACCATGTGTTGGACAGGGATCATTGGGGGATGTGCACAAAATGGAAGAGCAGACGAGGCAATTAGTCTTCTGCGTAAGATGATAGAATCTGGTACAAAGCCAAATGAAATCACCATTCTAGGTGTTCTCACTGCATGTAGACATGCTGGCCTAGTTGAAGAGGCATGGACTATATTTAAGTCTATCCAAACAGAGTATGGATTGACACCATACCCAGAACATTACAATTGTATGGTTGATATACTTGCTAAAGCAGGACGTTTTAAAGAAGCAAGAAAATTGATTAGTAACATGCCATTTAAGCCTGATAAAACTATATGGTGCTCCTTGCTTGGTGCCTGTGGAACTTACAAGAATAGACATCTTGCAAATATCGTTGCTGAGCATCTTCTTGCTACCTCGCCAGAAGATGCTTCTGTGTATATAATGCTGTCAAATGTTTATGCATCACTTGGAATGTGGGATAATTTAAGCAAAGTGCGAGAAGCTGTCCAAAAATACAATCAGAAAGTAATAGCGCAGAAGTGTCAAATTAAAGGACGTTTAGATGGAAGATACTACGCCAAAGAATGCAGCAGTTCAGTCCGATTAGCTTTTTATACTTTCTATTGCCATGGGGTTTCACACGTCCAATGCTGCCTCTCCAACAAAGAGATAAAAGCTAAAAAGAAATCATCTGGTCTCAGCTCCTCTTTTAGCAAGGTTCAGCAGCTTGACATTTTTAGCATATGGTGA 2121 0.4078 MISVYAKCSHFDDAQTLFDEMPHRNIISYTTMVSAFTNSGRPHEALTLYNHMLESRTVQPNQFLYSAVLKACGLVGDVELGRLVHRHISQAKLEFDTVLMNALLDMYVKCGSLRDAKRVFHEIPCKNSTSWNTLILGHAKEGCMRDALNLFDQMPEPDLVSWNSIIAGLADNASPHALHFVSMMHVRGLKLDAFTFPCALKACSLFGELTMGRQIHGCIIKSGFECSCYCISALIDMYSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDYVKALSLIACMHHSGALFDSYTFSIALKVCIYFHNLRLASQVHGLVITSGYELDYVVGSILIDLFAKQGNINYALRLFESLPDKDVVSWSSLIAGCARFGSGTLASSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFILKKGYESEGVITTALIDMYAKCGEIEDALALFHCLSEIDTMCWTGIIGGCAQNGRADEAISLLRKMIESGTKPNEITILGVLTACRHAGLVEEAWTIFKSIQTEYGLTPYPEHYNCMVDILAKAGRFKEARKLISNMPFKPDKTIWCSLLGACGTYKNRHLANIVAEHLLATSPEDASVYIMLSNVYASLGMWDNLSKVREAVQKYNQKVIAQKCQIKGRLDGRYYAKECSSSVRLAFYTFYCHGVSHVQCCLSNKEIKAKKKSSGLSSSFSKVQQLDIFSIW 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01165 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Cca03g01165 706 Pfam E motif 579 632 IPR046848 -
Cca03g01165 706 Pfam PPR repeat family 25 72 IPR002885 -
Cca03g01165 706 Pfam PPR repeat family 263 306 IPR002885 -
Cca03g01165 706 Gene3D Tetratricopeptide repeat domain 127 176 IPR011990 GO:0005515
Cca03g01165 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 126 IPR002885 -
Cca03g01165 706 TIGRFAM PPR: pentatricopeptide repeat domain 263 290 IPR002885 -
Cca03g01165 706 TIGRFAM PPR: pentatricopeptide repeat domain 465 498 IPR002885 -
Cca03g01165 706 TIGRFAM PPR: pentatricopeptide repeat domain 27 58 IPR002885 -
Cca03g01165 706 TIGRFAM PPR: pentatricopeptide repeat domain 130 155 IPR002885 -
Cca03g01165 706 TIGRFAM PPR: pentatricopeptide repeat domain 537 560 IPR002885 -
Cca03g01165 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Cca03g01165 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Cca03g01165 706 Gene3D Tetratricopeptide repeat domain 1 126 IPR011990 GO:0005515
Cca03g01165 706 Pfam PPR repeat 436 458 IPR002885 -
Cca03g01165 706 Pfam PPR repeat 363 390 IPR002885 -
Cca03g01165 706 Pfam PPR repeat 465 493 IPR002885 -
Cca03g01165 706 Pfam PPR repeat 536 560 IPR002885 -
Cca03g01165 706 Pfam PPR repeat 99 126 IPR002885 -
Cca03g01165 706 Pfam PPR repeat 232 253 IPR002885 -
Cca03g01165 706 Pfam PPR repeat 335 360 IPR002885 -
Cca03g01165 706 Pfam PPR repeat 130 156 IPR002885 -
Cca03g01165 706 PANTHER BNAC03G28070D PROTEIN 148 254 - -
Cca03g01165 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Cca03g01165 706 PANTHER BNAC03G28070D PROTEIN 258 632 - -
Cca03g01165 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 148 254 - -
Cca03g01165 706 SUPERFAMILY TPR-like 13 620 IPR011990 GO:0005515
Cca03g01165 706 Gene3D Tetratricopeptide repeat domain 433 660 IPR011990 GO:0005515
Cca03g01165 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Cca03g01165 706 PANTHER BNAC03G28070D PROTEIN 2 79 - -
Cca03g01165 706 PANTHER BNAC03G28070D PROTEIN 43 146 - -
Cca03g01165 706 Gene3D Tetratricopeptide repeat domain 198 309 IPR011990 GO:0005515
Cca03g01165 706 Gene3D Tetratricopeptide repeat domain 310 415 IPR011990 GO:0005515
Cca03g01165 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 79 - -
Cca03g01165 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 258 632 - -
Cca03g01165 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 43 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01165 Cca-Chr3 27975110 27978344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01165 253 631 Glycoside Hydrolase AT3G49170 28.212 5.04e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01165 - - gmx:100780678 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01165 03 27975110 27978344 Cca03g01165 03 27975110 27978344 ECH