Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01164 ATGGCGGGTGGTGGAAAGGTGTCGTTCAAAGTAACACTGACATCCGATCCAAAGTTACCCTTCAAAGTGTTTAGCGTTCCAGAGGCTGCACCTTTTACTGCCGTTCTCAAATTCGCTGCCGAAGAATTCAAAGTCCCTCCCCAGACCAGCGCTATCATCACCAACGATGGCGTTGGCATAAATCCCCAGCAGAGCGCAGGCAATGTCTTCCTTAAGCATGGCTCAGAATTGCGCTTGATTCCGCGTGACAGGGTTGGTGCCTCTTAG 267 0.5131 MAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAS 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01164 88 PIRSF Ufm1 1 88 IPR005375 GO:0071569
Cca03g01164 88 CDD Ubl_UFM1 7 81 - -
Cca03g01164 88 Gene3D - 4 87 - -
Cca03g01164 88 Pfam Ubiquitin fold modifier 1 protein 6 80 IPR005375 GO:0071569
Cca03g01164 88 PANTHER UBIQUITIN-FOLD MODIFIER 1 3 88 - -
Cca03g01164 88 SUPERFAMILY Ubiquitin-like 2 86 IPR029071 -
Cca03g01164 88 PANTHER UBIQUITIN-FOLD MODIFIER 1 3 88 IPR005375 GO:0071569
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01164 Cca-Chr3 27969154 27972159 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01164 K12162 - zju:107421011 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01164 03 27969154 27972159 Cca03g01164 03 27969154 27972159 ECH