Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01163 ATGGCTTCTGAGAAGGTTGAGACGGTGGTTGCTGGGAATTACTTAGAAATGGAGAGGGAAGAGGAGGGTTCTAAGTCTACTACTGGCAAATTATCTAGGCTCTTTTGGCATGGTGGTTCTGTGTATGATGCATGGTTTAGCTGTGCTTCTAATCAGGTTGCACAAGTGCTACTGACACTGCCATATTCCTTTTCACAACTGGGGATGTTATCTGGGATCATATTTCAGCTTTTTTACGGACTTATGGGAAGCTGGACTGCTTACCTTATCAGTGTCCTTTATGTTGAGTACAGAACCAGAAAGGAGAGAGAAAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGGAATCTTGGTCTCTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGTAACATATACTACATAAATGACAATCTGGACAAGAGAACTTGGACTTACATCTTTGGCGCATGCTGTGCAACAACAGTCTTCATCCCTTCTTTCCACAATTACAGAATCTGGTCATTCTCGGGCCTCATTATGACCACATACACTGCATGGTATATGACCATAGCTTCCCTTGTTCACGGACAGGTTGAGGGAGTGAAGCACTCAGGCCCAACCAAATTGGTTCTCTATTTCGCTGGGGCTACCAACATTCTCTACACTTTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTTAAGATGATATATCTGATCGCAACCCTATATGTGCTGACACTAACTTTGCCATCAGCATCTGCAGTCTATTGGGCATTTGGAGATATGCTTCTCACCCATTCAAATGCTCTCTCATTGCTCCCAAGGACAGGCTTCAGAGATACCGCTGTTGTTCTCATGCTCATTCACCAGTTCATAACTTTTGGGTTTGCTTGCACTCCTTTATACTTCGTGTGGGAGAAATTCATTGGAGTGCATGAAACCAAGAGTTTGTTCAAAAGGGCGTTGGCTAGACTTCCTGTTGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTCCTAGTCAGCTTCACTGTTTACATAATTCCTGCAATGGCACACATGGTCACCTTTGCTTCAGCACCTGCTAGGGAGAATGCTGTGGAAAGACCACCATCAAGGTTAGGAGGTTGGGTAGGATTGTACTCCATGAACGTGTTTGTGGTGGTGTGGGTTTTGGTGGTAGGATTTGGGTTGGGAGGATGGGCAAGCATGATTAATTTCATACACCAAATTGACACATTTGGGCTATTTGCAAAGTGCTATCAGTGTCCCCCTCACAAGGCATAA 1398 0.4349 MASEKVETVVAGNYLEMEREEEGSKSTTGKLSRLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIIFQLFYGLMGSWTAYLISVLYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFSGLIMTTYTAWYMTIASLVHGQVEGVKHSGPTKLVLYFAGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVLTLTLPSASAVYWAFGDMLLTHSNALSLLPRTGFRDTAVVLMLIHQFITFGFACTPLYFVWEKFIGVHETKSLFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPAMAHMVTFASAPARENAVERPPSRLGGWVGLYSMNVFVVVWVLVVGFGLGGWASMINFIHQIDTFGLFAKCYQCPPHKA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01163 465 Pfam Transmembrane amino acid transporter protein 37 429 IPR013057 -
Cca03g01163 465 PANTHER OS05G0424000 PROTEIN-RELATED 3 460 - -
Cca03g01163 465 PANTHER AUXIN TRANSPORTER-LIKE PROTEIN 3 3 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01163 Cca-Chr3 27960419 27963962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01163 1 464 Organic Solute Cotransporters AT1G77690 87.846 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01163 K13946 - gmx:100815243 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01163 03 27960419 27963962 Cca03g01163 03 27960419 27963962 ECH