Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01155 ATGTCCAGAGTTTCCACTGAAAATGAAACCACCACCGTTCAGAAAAGGCATCATCCTATGCAGGTTGCGAAGCGCTTAGAGAAGTTCCAAAAGGATAGAGGAGGTGCAAGCAACTTGAAAGATGGAACCATTGACCTTGGACGAGGCTTTCCCAACTTCGATGGTCCAGAGTTTATAAAGGAAGCAGCAATTCAGGCAATCAGGGATGGAAAAAATCAGTATGCACGAGGTTATGGAGTTCCAGATCTAAACATTACTATTGCTGAAAGATTTAAGAAAGATACTGGATTAGTGGTAGACCCTGATAAGGAAATTACAGTCACAAATGGGTGCTTAGAAGCAATTGCTGCGACTTCGTTAGGACTAATAAATCCTGGTGATGAAGTTATCATGTTTTCTCCTTCATTTGGTGGTTATGCAGCCAATTTAACTATGGCTGGTGCAAAAATAATAAGCATCACTTTGCATCCTCCAAATTTTGTTGTCCCAATTGAAGAATTGAAGTCCATTGTGTCGAGGAATACCCGCGCCATACTTGTAAATACTCCTCACAACCCTACTGGAAAGATGTTCACTCTAGAGGAGCTCAATTCTATTGCATCACTTTGCATTGAGAATGATGTTCTGGTTTTCGCTGATGAAGTTTATGGCAAGTTGGCATATGATATGGAGCACATTTCGATGGCTTCTTTGCCTGGAATGTTTGAAAGGACAGTGACAATGAACACCTTGGGAAAGACATTCTCCTTAACAGGATGGAAGATTGGTTGGGCCATAGCACCCCCGCACTTGACATGGGGACTACGACAGGCACATAATTATCTCATTTTCTCGAGCCCCAATCCTTTGCAGTGTGCAGCTGCAGTAGCTCTTAGTGCACCAGACTCTTACTATGTAAAGTTGAGGAGGGATTATATGGCAAAGAGGGATATTTTGGTGGAAGGATTAAAGGCTGCTGGCTTCAAGGAGGTGGGGGTGCTGGCAATCCCTTGCAGTTTGTTTTTCTTGAATCCAAAAGAGGGAAAGAATCTTGTCAGATTTGTTTTCTGCAAGGATGAGGAAACCCTTAGGGAAGCAGTTAAGAGGTTGAAGAAGCTTAAAAAATGA 1107 0.4255 MSRVSTENETTTVQKRHHPMQVAKRLEKFQKDRGGASNLKDGTIDLGRGFPNFDGPEFIKEAAIQAIRDGKNQYARGYGVPDLNITIAERFKKDTGLVVDPDKEITVTNGCLEAIAATSLGLINPGDEVIMFSPSFGGYAANLTMAGAKIISITLHPPNFVVPIEELKSIVSRNTRAILVNTPHNPTGKMFTLEELNSIASLCIENDVLVFADEVYGKLAYDMEHISMASLPGMFERTVTMNTLGKTFSLTGWKIGWAIAPPHLTWGLRQAHNYLIFSSPNPLQCAAAVALSAPDSYYVKLRRDYMAKRDILVEGLKAAGFKEVGVLAIPCSLFFLNPKEGKNLVRFVFCKDEETLREAVKRLKKLKK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01155 368 Gene3D Aspartate Aminotransferase, domain 1 323 368 IPR015422 GO:0003824
Cca03g01155 368 SUPERFAMILY PLP-dependent transferases 41 366 IPR015424 -
Cca03g01155 368 PANTHER FI04487P 37 322 - -
Cca03g01155 368 PANTHER FI04487P 322 367 - -
Cca03g01155 368 Gene3D - 56 292 IPR015421 GO:0003824
Cca03g01155 368 CDD AAT_like 44 365 - -
Cca03g01155 368 PANTHER FI04487P 37 322 - -
Cca03g01155 368 PANTHER FI04487P 322 367 - -
Cca03g01155 368 Pfam Aminotransferase class I and II 44 322 IPR004839 GO:0009058|GO:0030170
Cca03g01155 368 Gene3D Aspartate Aminotransferase, domain 1 42 322 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01155 Cca-Chr3 27791376 27796358 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01155 K23977 - gmx:100818968 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01155 03 27791376 27796358 Cca03g01155 03 27791376 27796358 ECH