Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01148 ATGGCGAACGACATGAACCTAAGCTCTCGAACCCCAAACCCTCTGCTCTTGCTCCTATGCTTCACCACACTTTTGCTCCTACGTACCGAGGCTGTATGGTTAACTATTCCTAGTAAGGGAACCAAGTGCATGTCCGAGGAAATCCAGTCACACGTCGTCGTTTTAGCCGATTACTATGTTGTCGCCGATGATGTCAAGGGTCACCCGCTTCAAACTATTTCTGCCAAGGTCACATCCCCTTATGGAAATACTCTTCACCAGAATGAAAATGTTACCCACGGTCAGTTTGCATTTACAACTACCGAGACTGGGAACTACGTGGCGTGTTTTTGGCTGGATAACAAACATCAAGAAGGTGCAGGAGAAACCACACTCAGCCTTGAGTGGAAAACTGGAATCGCTGCCAAAGATTGGGACTCTGTGGCAAGAAAAGAAAAGATAGAGGGTGTTGAACTTGAGCTGAGGAAACTTGAAGGGGCTGTGGAAGCCATCAGAGACAATCTGATATATTTGAAGAACAGGGAAGCAGAGATGAGGGAAGTGAGTGAAGCAACGAATGCTAGAGTGGCTTGGTTCAGTATCCTTTCCCTTGGGCTCTGCATTTTTGTTTCGGTGTTTCAAGTGTTGCATCTGAAACGCTTCTTTGTGAAGAAGAAGCTCATATAG 666 0.4625 MANDMNLSSRTPNPLLLLLCFTTLLLLRTEAVWLTIPSKGTKCMSEEIQSHVVVLADYYVVADDVKGHPLQTISAKVTSPYGNTLHQNENVTHGQFAFTTTETGNYVACFWLDNKHQEGAGETTLSLEWKTGIAAKDWDSVARKEKIEGVELELRKLEGAVEAIRDNLIYLKNREAEMREVSEATNARVAWFSILSLGLCIFVSVFQVLHLKRFFVKKKLI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01148 221 Coils Coil 147 174 - -
Cca03g01148 221 SMART EMP24_GP25L_2 31 216 IPR009038 -
Cca03g01148 221 ProSiteProfiles GOLD domain profile. 41 131 IPR009038 -
Cca03g01148 221 PANTHER EMP24/GP25L/P24 FAMILY PROTEIN 13 221 - -
Cca03g01148 221 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 13 221 IPR015720 -
Cca03g01148 221 Pfam emp24/gp25L/p24 family/GOLD 33 215 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01148 Cca-Chr3 27721394 27723544 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01148 K20352 - gmx:100500676 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01148 03 27721394 27723544 Cca03g01148 03 27721394 27723544 ECH