Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01130 ATGGCTCAAACCATGTTGCTCATGTCTAGTGTCTCTAGTAGTTATTCCGTGGCTTTGAACAAAGACGTTTTCCTCCAATTGCAGGCTCAAAGACTAAGACCTAAGTTCTCTGATCTCTCATTCAACCCACTTCCATCAAATTCTTTGTTTTCTTCACGCCCTACATTCACAACTCTCGCCCTCTTCAAATCCAAGACCAAAGCCCCTCCTGCCAAGACCAAGGTTACAAAGCCAAAGGTTGAAGATGGTATCTTTGGCACTTCTGGGGGATTTGGTTTTACCAAGCAGAATGAGCTGTTTGTGGGTCGTGTTGCCATGCTTGGTTTTGCGGCATCACTGCTGGGTGAAGCAGTAACTGGGAAAGGAATTCTAGCACAACTGAATCTGGAAACTGGAATTCCCATTTATGAAGCGGAGCCTCTTCTTCTGTTCTTCATCCTTTTCACTCTGCTAGGAGCCATTGGAGGTTTAGGTGACCGTGGTAGATTTGTGGATGACGAACCTACTACTGCAGGTGTTATTCCTCCTGGCAAAGGCTTCAGAGAAGCTCTTGGTCTCGGTCAAGGTCCTTTATTTGGATTCACGAAATCCAACGAGCTATTTGTGGGAAGATTGGCCCAATTGGGTTTCGTTTTCTCTTTGATCGGAGAAATCATCACTGGGAAGGGAGCTCTAGCACAACTGAACATTGAGACTGGGGTACCCATCAACGAAATCGAACCCCTAGTCTTGTTCAACGTTCTTTTCTTCTTCATTGCTGCTTTGAATCCTGGAACTGGCAAATTCGTTACAGATGAGGAGGCTGATGATTAG 813 0.4551 MAQTMLLMSSVSSSYSVALNKDVFLQLQAQRLRPKFSDLSFNPLPSNSLFSSRPTFTTLALFKSKTKAPPAKTKVTKPKVEDGIFGTSGGFGFTKQNELFVGRVAMLGFAASLLGEAVTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGGLGDRGRFVDDEPTTAGVIPPGKGFREALGLGQGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQLNIETGVPINEIEPLVLFNVLFFFIAALNPGTGKFVTDEEADD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01130 270 SUPERFAMILY Chlorophyll a-b binding protein 75 248 - -
Cca03g01130 270 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 192 255 - -
Cca03g01130 270 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 1 181 - -
Cca03g01130 270 Gene3D Chlorophyll a/b binding protein domain 55 135 - -
Cca03g01130 270 PANTHER PHOTOSYSTEM II SUBUNIT S 1 181 - -
Cca03g01130 270 PANTHER PHOTOSYSTEM II SUBUNIT S 192 255 - -
Cca03g01130 270 Pfam Chlorophyll A-B binding protein 89 214 IPR022796 -
Cca03g01130 270 Gene3D Chlorophyll a/b binding protein domain 136 240 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01130 K03542 - gmx:100807355 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01130 03 27374793 27376433 Cca03g01130 03 27374793 27376433 ECH