Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g01129 | ATGATGGAGAAAAATAGTTTGTTGTGGGAGAGGAAATCTTCTGGTGAAACTGAAAGTTCAGGGTTAGCATTGACTCATTCTGAGAAGCAACCAGATGAAGAGCACGAGGCACTGAATGAATCTCCTATTGGACATAATCAATCACCGGATGTCACCTCAAAATCTGTGGCCAGAGCTGAAGATATTAATGATATGTCCTGTATCCATGCACAATCACCTGAAGTCACCTCACACATAACAGAAAACATAAATGGTTCATTGGAGGAAGATGAAGATGGAGCAAAGGATAATATAATAAAGGATGGAGATGTAACTGATGGATTGGGGAACTTGTCAGAAAAGTTATCTGCAGCGCTTGTGAATGTAAGTGCCAAAGAAGATTTGGTCAAGCAACATGCGAAAGTCGCTGAAGAAGCTATTGCAGGATGGGAAAAGGCTGAAAATGAAGTGACAGATTTAAAGAAGCAAGTTGAGGCACTAACTCTAAGAAATTCAACACTGGAAGATCGTGTCACACATCTAGACAGTGCACTTAAGGAGTGTGTTAGGCAGCTAAGACAAACAAAAGAAGAACAGGAGCAAAATATTCATGATTCTGTATTAAAGAAAACACATGAGCTGGAATCAGCCAAAACTAAACTCGAGAACCAGCTCAAGGAGCTCCAGAGAAAATCAAATGCTTCTAATGCTAGTTCTCCTTCATCAACTGATTCTGATATGCGCCAGAAGGTTGAATATTTGGAGAAAGAGAACATGGCACTCGAACACGAGCTCCAAGCTCAATCTGAAAAGCTGGAAATTAGGACAATAGAAAGGGATTTAAGCACCCAAACAGCTGAGATGGCTAGCAAGCAACATTTAGAAAGCATCAATAAAGTGGCCAAGCTTGAGGCTGAGTGCCGGAGACTGAAAAGCATGGCTTGTAGAGATTCCATTACATCATCCTCATTTTGTGTTGAATCTCTCAAAGATGGTCAATCAGACAGTGGAGACATGACTAGTGCAATGGATATTGATATCTGCGGGAAGAATGGCTCAGAACCAGAAATGTGTGAGTTAAGTTCTGACTCATGGGCATATGCACTAATTGCTGAGCTTGATCAGTTCAAGAATGAAAAGCATAAACAAACTCCATCTGGTTGTGTTAACATTGATCTCATGGATGATTTTCTTGAAATGGAACGACTTGCAGCACTGCCTGATACCAAGAATGAAAGCTTTATCAAGGAATCAGTTGCTAACAATCAATGCATTCATGAAGAGAGCTCCATCAGAGGCAAGTTTAATGTTACAAATCGGCAAATGGATGAAATAAAAGAGAAGCTAGAGAAAGCCAAAGCAGAGAAAGATGAAGTGAAGCTATGCTTAATGAAAAGTGAGTGTGTTATTGAGGCATCACAGCTTCAAATGAAGGAGGCAGAAACAAAATTGGAGGAGTTGCAAAGAGAGCTAGAGAATGCCTACAAATCAAAGCAAATGTTAGAAAATGAACTAATGAGCATGCAGGCTGAGGCTCAATCAATAACAACAAAACTTCATTTATTAGAAGCAGAAGTTAATAAGGAAAAGGCTATGTCAGTTGAAATTGCAACTAGGTGTAAGGAATTGGAGGATGAGCTAGAAAGAAAGAAGCAGGAAGAGAAATTCGGGTCAATAACCAGCTCATACAGTGAAATAAAACTAAAGCAGGAGGACCTAGCACTAGCAGCAGGAAAGCTTGCTGAGTGCCAGAAAACAATAGCATCTTTGGGGAATCAATTAAGTTCACTAACAACACTAGAAGATTTCCTCATTGACACTGCCAGCATTCCAGAGTTTTCTGCAAGTTCATCACTCATTGCTAGAGCTGGTGGAGAAATGTGGAAGTTGCATTCAAAAGACACGCACTCACCTAGAAGAGATTCCGGTACTTCATGGTCGGGTCCACCCTTAAACAAAAACGATGAAAGCTCACCACCCTCATCAACCAACTTGCTCAAGCATGACAGTTCTGAGAAGAGTAGAAATGGTTTTGCAAAATTTCTCTCTCAAACTGAGAGTGGAATCCAACTAGGAATTTAG | 2061 | 0.4042 | MMEKNSLLWERKSSGETESSGLALTHSEKQPDEEHEALNESPIGHNQSPDVTSKSVARAEDINDMSCIHAQSPEVTSHITENINGSLEEDEDGAKDNIIKDGDVTDGLGNLSEKLSAALVNVSAKEDLVKQHAKVAEEAIAGWEKAENEVTDLKKQVEALTLRNSTLEDRVTHLDSALKECVRQLRQTKEEQEQNIHDSVLKKTHELESAKTKLENQLKELQRKSNASNASSPSSTDSDMRQKVEYLEKENMALEHELQAQSEKLEIRTIERDLSTQTAEMASKQHLESINKVAKLEAECRRLKSMACRDSITSSSFCVESLKDGQSDSGDMTSAMDIDICGKNGSEPEMCELSSDSWAYALIAELDQFKNEKHKQTPSGCVNIDLMDDFLEMERLAALPDTKNESFIKESVANNQCIHEESSIRGKFNVTNRQMDEIKEKLEKAKAEKDEVKLCLMKSECVIEASQLQMKEAETKLEELQRELENAYKSKQMLENELMSMQAEAQSITTKLHLLEAEVNKEKAMSVEIATRCKELEDELERKKQEEKFGSITSSYSEIKLKQEDLALAAGKLAECQKTIASLGNQLSSLTTLEDFLIDTASIPEFSASSSLIARAGGEMWKLHSKDTHSPRRDSGTSWSGPPLNKNDESSPPSSTNLLKHDSSEKSRNGFAKFLSQTESGIQLGI | 686 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g01129 | 686 | Coils | Coil | 136 | 170 | - | - | |
| Cca03g01129 | 686 | Pfam | Filament-like plant protein, long coiled-coil | 239 | 306 | IPR008587 | - | |
| Cca03g01129 | 686 | Pfam | Filament-like plant protein, long coiled-coil | 125 | 224 | IPR008587 | - | |
| Cca03g01129 | 686 | Pfam | Filament-like plant protein, long coiled-coil | 354 | 413 | IPR008587 | - | |
| Cca03g01129 | 686 | Pfam | Filament-like plant protein, long coiled-coil | 408 | 591 | IPR008587 | - | |
| Cca03g01129 | 686 | Coils | Coil | 463 | 518 | - | - | |
| Cca03g01129 | 686 | SUPERFAMILY | Tropomyosin | 422 | 563 | - | - | |
| Cca03g01129 | 686 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
| Cca03g01129 | 686 | PANTHER | FILAMENT-LIKE PLANT PROTEIN 1-RELATED | 2 | 493 | - | - | |
| Cca03g01129 | 686 | PANTHER | FILAMENT-LIKE PLANT PROTEIN 1-RELATED | 488 | 684 | - | - | |
| Cca03g01129 | 686 | Coils | Coil | 182 | 231 | - | - | |
| Cca03g01129 | 686 | Coils | Coil | 244 | 264 | - | - | |
| Cca03g01129 | 686 | MobiDBLite | consensus disorder prediction | 219 | 240 | - | - | |
| Cca03g01129 | 686 | Coils | Coil | 526 | 546 | - | - | |
| Cca03g01129 | 686 | Coils | Coil | 428 | 455 | - | - | |
| Cca03g01129 | 686 | MobiDBLite | consensus disorder prediction | 623 | 672 | - | - | |
| Cca03g01129 | 686 | PANTHER | FILAMENT-LIKE PLANT PROTEIN 4 | 488 | 684 | - | - | |
| Cca03g01129 | 686 | PANTHER | FILAMENT-LIKE PLANT PROTEIN 4 | 2 | 493 | - | - | |
| Cca03g01129 | 686 | MobiDBLite | consensus disorder prediction | 634 | 660 | - | - | |
| Cca03g01129 | 686 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Cca03g01129 | 686 | MobiDBLite | consensus disorder prediction | 221 | 240 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g01129 | Cca-Chr3 | 27344947 | 27349288 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g01129 | - | - | gmx:100783676 | 1006.13 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca03g01129 | 03 | 27344947 | 27349288 | Cca03g01129 | 03 | 27344947 | 27349288 | ECH |