Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01127 ATGAACGCCGTAGCGACTGCTGCAGTTCTCTCTCTGCCTTTCTCCTTCTCTAGATCGTCCAAGCTTGACGCCAAAAAGGCTTTGAAAGGTCGGTTTAGAGTGTTTGCTGTATATGGAGAAGAGATAGATGATAAGAAGAATGCGTGGAGTGCGCTCTTTGATGTGGAGGATCCAAGATCCAAGGTGCCACGGTATAAAGGAAAGTTTTTGGATGTATATCAAGCCCTTGAAGTCGCAAGATATGATATTCAATACTGTGATTGGCGAGCTCGCCAAGACTTGCTTACCATCATGCTTCTCCATGAAAAGGTGGTGGAAGTTCTTAATCCTTTGGCTCGTGATTATAAGTCCATTGGCACCATGAAAAAGGAGCTAGCAGAGTTGCAAGAAGAATTAGCACAAGCACACAGACAGGTTCATATATCTGAGGCGAGGGTGTCCACTGCTTTAGATAAACTAGCTTACATGGAAGAACTGGTAAATGATAAGTTGTTGCAAGAAAGAAGCACGACTGAAGTTTCCCATACATCATCTTCTTCCGGTACATCTGTTGAATCTGTAGATATAGAAAAGAGAAGACCGCCACGAAGAAGCTTGGATGTGTCAGGTCCAGTTCAGTCATACCATCCCCACTTGAAGAATTTCTGGTATCCTGTGGCTTTTTCTACTGACTTGAAGGATGATACAATGATCCCAATAGAATGTTTTGAGGAACCATGGGTCATCTTCAGAGGGAAAGATGGGAAGCCTGGATGTGTTCAGAACACCTGCGCACACAGAGCATGTCCTCTGCACCTTGGTTCCGTAAATGAGGGTCGTATCCAATGCCCTTACCATGGCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCATCTACTCGACTGCTAAATGTGAAGATAAAGTCATTTCCATGTTTTGAAAAAGAGGGGATGATCTGGATTTGGCCTGGCAATGACCCCCCAACAGCTGCCCTTCCATCTTTGCTACCTCCATCTGGGTTTGAAGTCCATGCTGAGATTGTCATGGAGCTTCCTATCGAACATGGGTTACTTTTGGACAACCTTCTGGATCTTGCACATGCCCCCTTCACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAGCCTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCCTATCCAATTGATATGGAGTTTCGGCCACCTTGCATGGTTCTATCAACCATTGGAATTTCCAAGCCTGGTAAACTCGAAGGACAAAGCACCAGTCAGTGCACCACACACCTGCACCAACTTCATGTCTGCTTACCATCTTCAAAACAAAAAACAAGGTTGCTATACAGAATGTCACTGGATTTTGCTCCTGTGCTTAAGCATGTACCTTTTATGCAACATCTATGGAGACATTTTGCAGAGCAGGTTTTAAATGAGGATCTGCGACTAGTGTTAGGCCAGCAAGAACGGATGAACAAAGGTGCAAATGTGTGGAACTTCCCTGTATCCTATGACAAGCTTGGAGTAAGATACAGACTATGGAGAGATGCCTTGGAGCGAGGAGCTAAGCAACTACCCTTCAGCAAATAG 1596 0.448 MNAVATAAVLSLPFSFSRSSKLDAKKALKGRFRVFAVYGEEIDDKKNAWSALFDVEDPRSKVPRYKGKFLDVYQALEVARYDIQYCDWRARQDLLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEELAQAHRQVHISEARVSTALDKLAYMEELVNDKLLQERSTTEVSHTSSSSGTSVESVDIEKRRPPRRSLDVSGPVQSYHPHLKNFWYPVAFSTDLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRLLNVKIKSFPCFEKEGMIWIWPGNDPPTAALPSLLPPSGFEVHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTSQCTTHLHQLHVCLPSSKQKTRLLYRMSLDFAPVLKHVPFMQHLWRHFAEQVLNEDLRLVLGQQERMNKGANVWNFPVSYDKLGVRYRLWRDALERGAKQLPFSK 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01127 531 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 71 531 - -
Cca03g01127 531 Gene3D - 338 526 - -
Cca03g01127 531 MobiDBLite consensus disorder prediction 170 185 - -
Cca03g01127 531 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 71 531 - -
Cca03g01127 531 SUPERFAMILY ISP domain 211 321 IPR036922 GO:0051537
Cca03g01127 531 Coils Coil 118 145 - -
Cca03g01127 531 Pfam Pheophorbide a oxygenase 403 498 IPR013626 GO:0010277
Cca03g01127 531 Pfam Rieske [2Fe-2S] domain 216 297 IPR017941 GO:0051537
Cca03g01127 531 CDD Rieske_RO_Alpha_Cao 199 327 - -
Cca03g01127 531 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 216 316 IPR017941 GO:0051537
Cca03g01127 531 SUPERFAMILY Bet v1-like 312 523 - -
Cca03g01127 531 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 257 279 IPR015881 GO:0005506|GO:0051537
Cca03g01127 531 MobiDBLite consensus disorder prediction 167 204 - -
Cca03g01127 531 Gene3D - 210 333 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01127 Cca-Chr3 27326967 27332113 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01127 K13600 - gmx:100806298 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01127 03 27326967 27332113 Cca03g01127 03 27326967 27332113 ECH