Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01121 ATGATCTTATCTTCTTGCATCCTTCTTTTTTCTCTCTCATGGTTTACATTACCTGTGATTGGCACAAACTCCATTCGTGACCATTGCAAACCATACAAATCAATTATCAAACGATGGTCTGTACTTAACAAGAAATCATCATCATCCTCTAGTGGAGATAACCTACAACGCCGCAACCAAACACGACAGGAACCTATTCAAGATAAAAAAATCACGAAAGGAATTCACTGCTTTGGATTAAATGGAGATGATGATGATCGACCCGTGAGTTCAAGAGGATGTTGTTTATGCAGGCATAGAAACTTAGATAGTTCGTGTTTTCATTCCTTAATTTCTGCGTCTAGAAATGCATGCAGAAAGACTAATCACGCCTCAAGCAAGAGCTGCGATTTTAGGCCTACCCCTTCTTCATGGAACAGCAGCAGAAGTTTCACAATGCCTCCTCATCTGAACTCAAGGAATGCCAGCCGCAGGAGCAGCAATCCAATCATGTATTCTAATTCATCTGGGATGGTAAAACCCCCACCAATTGAGAAAAAGATTGAATGCACTCTGGAAGATTTGTGCTATGGATGCAAGAAAAAGATCATGATCACAAGGGATGTCCTCACAGATACAGGGGGAATAGTTCAAGAGGAAGAATTGGTGACGATAAATGTACAACCTGGATGGAAGAAAGGAACAAAGATTACATTTGAAGGAAAAGGGAATGAGAGACCAGGTGCCTACAGAGAAGATATAATATGTATCATCTCAGAGAAAAGACACGAGTTATTTAGAAGAGAAGGGGATGATTTGGAATTGAGTGTAGAAATTTCCTTAGTAAAGGCACTCACAGGCTGTACAATATTAGTCCCACTGTTGGGTGGAGAGCACATGACTTTGACACTTGACAATATCATACACCCTGGCTATGAGAAGATCATTTTTGGCCAAGGTATGCCAATCTCCAGTGAACCAGGGATGAGAGGAAACTTGAAAATTACGTTTCTAGTTGAGTTTCCAACACAACTCTCATACAATCAAAGATCAGAGGTTGTTCGTATTTTACAGGATTCTTCATGA 1065 0.4028 MILSSCILLFSLSWFTLPVIGTNSIRDHCKPYKSIIKRWSVLNKKSSSSSSGDNLQRRNQTRQEPIQDKKITKGIHCFGLNGDDDDRPVSSRGCCLCRHRNLDSSCFHSLISASRNACRKTNHASSKSCDFRPTPSSWNSSRSFTMPPHLNSRNASRRSSNPIMYSNSSGMVKPPPIEKKIECTLEDLCYGCKKKIMITRDVLTDTGGIVQEEELVTINVQPGWKKGTKITFEGKGNERPGAYREDIICIISEKRHELFRREGDDLELSVEISLVKALTGCTILVPLLGGEHMTLTLDNIIHPGYEKIIFGQGMPISSEPGMRGNLKITFLVEFPTQLSYNQRSEVVRILQDSS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01121 354 PANTHER FAMILY B PROTEIN, PUTATIVE-RELATED 24 351 - -
Cca03g01121 354 SUPERFAMILY HSP40/DnaJ peptide-binding domain 176 257 IPR008971 GO:0006457|GO:0051082
Cca03g01121 354 Gene3D - 172 255 - -
Cca03g01121 354 MobiDBLite consensus disorder prediction 123 168 - -
Cca03g01121 354 MobiDBLite consensus disorder prediction 45 66 - -
Cca03g01121 354 SUPERFAMILY HSP40/DnaJ peptide-binding domain 259 344 IPR008971 GO:0006457|GO:0051082
Cca03g01121 354 MobiDBLite consensus disorder prediction 45 61 - -
Cca03g01121 354 CDD DnaJ_C 175 338 - -
Cca03g01121 354 Pfam DnaJ C terminal domain 177 335 IPR002939 -
Cca03g01121 354 Gene3D - 256 336 - -
Cca03g01121 354 MobiDBLite consensus disorder prediction 123 171 - -
Cca03g01121 354 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 24 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01121 Cca-Chr3 27169095 27171219 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01121 K09519 - gmx:100782604 482.641