Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01117 ATGGGTTGTTGTAGGATTTGGATTTGGTTCCTCTTTGTGTTGGCGGTGGTGTCGCTTCCTTCTAGAATCTCCGGTGAAACATGGGAGGCTGTTCTGACATTGGATCACTCCAACTTCTCCCACACTGTCAGCAAGCACAATCTCATCGTCGTCCAGTTCTACGCGCCATGGTGTGGCCGCTGTAAGAAGCTTGCTCCGGAGTATGAAAAAGCCTCTTCTATCCTGAGTAGTCATGATCCTCCAGTTGTTTTGGCTAAAATTGATGCCGATGATGAGAAGAACAAAGTCCTTGCATCGGAATTTGATGTTAGGGGATACCCAACAATTAAGATACTTAGAAATGGTGGAAAGAATGTTCAAGCCTACAAAGGTCCCTATGAAGCAGATGGCATGGTTGACTATTTGAAGACACAAACTGGTCCTGCTTCAACTGAAATTAAATCTGTTGACGATGCTACTGCTTTTATTGGTGAACATAAAGTTGCTATTGTTGGAGTGTTTCCAAAATTTTCTGGGGAGGAACTTGATAACTTTACCGTATTAGCAGAGAAGTTGCGTGCTGACTATGACTTTGGTCACACTCTGAATGCCAAACACCTTCCAAGAGGAGAATCATCAGTCACTGGGCCAATAGTTAGGTTATTCAAGCCATTCGATGAACTTTTTGTTGACTTCCAGGATTTCCATGTGGAAGCTCTAGAGAAATTTGTTGAAGAATCTAGTGTCCCTCTTGTGACTGTCTTTAACAATGATCTGAGCAATTACCCTTTTATTGTCAAATTCTTCGGCAGTCCCAACGTAAAGGTAATGTTGTTTATCAACTTCACTGCTGAAGGTGCTGAATCTTTCAAATCAAAATTCCGAGAAACTTCTCAGCAATATAGACAACAGGGTTTAAGCTTTCTGGTGGGAGATGTTAAGTCTAGTACAGCTCATTTCCAGTATCTTGGAGTGAAGGAAGACCAAGTACCTCTAATTGTCATACAACATAAGGACGGGAAGAAATTTGTTAAACCCAATTTGGAACCTGATCACATTTCAAGTTGGCTCAAGGCATACAAGGACGGAAATATTGCACCTTATCTGAAGTCTGAACCTATTCCTGAAGCTAACAATGAACCTGTTAAAGTGGTTGTTGGGGACAGTCTCCAGGACGTAGTTTTCAACTCTGGGAAGAATGTTCTGCTGGAGTTTTATTCTCCCTGGTGTGGTTATTGCACAGAGTTGGCTCCAATATTGGAGGAAGTTGCTGTCTCATACGAAAGTGATGCTGATGTGATTATTGCAAAACTGGATGGAATTGCCAATGATGTCCCAAGTGAAAGCTTTGAAGTGAAAGGTTATCCAACCGTAACCGAGATAAGCCTGCTCAAAACCAGCAAGAACAAGGAAAAGGGAAAGAAGAGCTTTGAAAGGAAAGAAGCTAAGTGA 1431 0.42 MGCCRIWIWFLFVLAVVSLPSRISGETWEAVLTLDHSNFSHTVSKHNLIVVQFYAPWCGRCKKLAPEYEKASSILSSHDPPVVLAKIDADDEKNKVLASEFDVRGYPTIKILRNGGKNVQAYKGPYEADGMVDYLKTQTGPASTEIKSVDDATAFIGEHKVAIVGVFPKFSGEELDNFTVLAEKLRADYDFGHTLNAKHLPRGESSVTGPIVRLFKPFDELFVDFQDFHVEALEKFVEESSVPLVTVFNNDLSNYPFIVKFFGSPNVKVMLFINFTAEGAESFKSKFRETSQQYRQQGLSFLVGDVKSSTAHFQYLGVKEDQVPLIVIQHKDGKKFVKPNLEPDHISSWLKAYKDGNIAPYLKSEPIPEANNEPVKVVVGDSLQDVVFNSGKNVLLEFYSPWCGYCTELAPILEEVAVSYESDADVIIAKLDGIANDVPSESFEVKGYPTVTEISLLKTSKNKEKGKKSFERKEAK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01117 476 ProSiteProfiles Thioredoxin domain profile. 353 476 IPR013766 -
Cca03g01117 476 SUPERFAMILY Thioredoxin-like 342 451 IPR036249 -
Cca03g01117 476 ProSiteProfiles Thioredoxin domain profile. 8 140 IPR013766 -
Cca03g01117 476 Gene3D Glutaredoxin 369 475 - -
Cca03g01117 476 CDD PDI_b_family 143 239 - -
Cca03g01117 476 Gene3D Glutaredoxin 139 243 - -
Cca03g01117 476 SUPERFAMILY Thioredoxin-like 240 372 IPR036249 -
Cca03g01117 476 CDD PDI_b'_family 259 354 - -
Cca03g01117 476 Gene3D Glutaredoxin 244 368 - -
Cca03g01117 476 PRINTS Thioredoxin family signature 102 113 - -
Cca03g01117 476 PRINTS Thioredoxin family signature 49 57 - -
Cca03g01117 476 PRINTS Thioredoxin family signature 57 66 - -
Cca03g01117 476 SUPERFAMILY Thioredoxin-like 30 141 IPR036249 -
Cca03g01117 476 TIGRFAM ER_PDI_fam: protein disulfide isomerase 29 452 IPR005792 GO:0003756
Cca03g01117 476 CDD PDI_a_family 32 135 - -
Cca03g01117 476 ProSitePatterns Thioredoxin family active site. 395 413 IPR017937 -
Cca03g01117 476 PANTHER PROTEIN DISULFIDE-ISOMERASE 8 451 - -
Cca03g01117 476 PANTHER PROTEIN DISULFIDE ISOMERASE 8 451 - -
Cca03g01117 476 Pfam Thioredoxin-like domain 167 351 - -
Cca03g01117 476 Gene3D Glutaredoxin 27 138 - -
Cca03g01117 476 Pfam Thioredoxin 31 136 IPR013766 -
Cca03g01117 476 Pfam Thioredoxin 376 463 IPR013766 -
Cca03g01117 476 SUPERFAMILY Thioredoxin-like 144 243 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01117 Cca-Chr3 27061198 27071723 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01117 K09580 - gmx:100170705 731.865