Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01116 ATGTCACCGAATCCCAACTATCTTCAAAGCTTCTACAGAGCAACCATGGCGTGTAGGGTTTCGATTTGCTTCTTCTTTCTCTTCGCGCTCTCTCTCCTCGCGTCTCAGATCTCTGCCGAGGACTCCGATGCCAAAGAGTTCGTTCTCACATTGGATCACTCCAACTTCCACGACACTGTCAGCAAGCACGATTTCATCGTTGTCGAGTTCTACGCACCGTGGTGTGGCCACTGTAAGAAGCTTGCTCCCGAGTATGAAAAGGCTGCTTCAATTTTGAGTAGTCACGATCCACCCGTTGTTTTGGCTAAAATTGATGCCAATGAAGAGAAGAACAAAGAGGTTGCATCTGAATATGATGTCAGGGGATACCCTACAATTAAGATTTTCAGAAATGGGGGAAAGAATGTTCAAGAATACAAAGGTCCTCGCGAAGCAGAAGGCATCATTGACTATTTGAAGAAACAAAGTGGTCCTGCTTCAACTGAAATTAAATCTGCTGATGAAGCTACTGCATTTATTGGTGAAAATAAAGTTGCTATTGTTGGAGTTTTCCCAAAATTTTCCGGGGAGGAGTTTGATAACTTCTCTGCCTTAGCCGAGAAGTTGCGTTCTGATTATGACTTTGGTCACACTCTGAATGCCAAGCACCTTCCAAAAGGAGAATCATCAGTTGAGGGTCCCGTTGTTAGGTTGTTCAAGCCATTCGATGAACTTTTTGTTGACTTCAAGGATTTCCATGGGGAAGCTCTAGAGAAATTTGTTGAAGAATCTAGTATCCCTGTTGTTACTGTCTTTAACAATGATCCGAGCAATCACCCTTTTGTTGTCAAATTCTTCAACAGTCCCAATGCAAAGGCAATGTTGTTCATCAACTTCACTGCTGAAAGTGCTGAATCTTTCAAATCAAAATACCGTGAAGCTGCTGAGCAATTTAAACAACAGGGTGTAAGCTTTCTTGTGGGAGATGTTGAGTCTAGTCAAGGTGCTTTTCAGTATTTTGGACTGAAGGAAGACCAAGTACCTCTAATTATCATACAACATAATGACGGGAAGAAATTTTTTAAACCCAATTTGGAAGCTGATCACATTTCAACTTGGTTGAAGGCATACAAGGACGGGAGCATTGCACCATTCGTGAAGTCTGAACCTATTCCTGAAACCAACAACGAACCTGTTAAAGTGGTGGTTGGCGACAGTCTTCAGGACATTGTTTTCAACTCTGGGAAGAATGTTCTGCTGGAGTTTTATGCTCCCTGGTGTGGTCATTGCAAACAGTTGGCTCCAATATTGGACGAAGTTGCTGTCTCATATCAAAATGATGCTGATGTTATTATTGCAAAACTGGATGCAACTGCCAACGATATCCCAAGTGACACCTTTGATGTCCAAGGTTATCCAACTGTGTACTTCAGGTCAGCAAGTGGAAAGATATCACAATACGATGGCAACAGGACCAAGGATGACATCATAGAATTCATCGAAAAGAACCGGGATAAACATGCTCAGGCTCAGCAAGAGCAAGTAAAAGATGAGCAAAAAACCACCGGAAAAGATGAGCTTTGA 1563 0.4248 MSPNPNYLQSFYRATMACRVSICFFFLFALSLLASQISAEDSDAKEFVLTLDHSNFHDTVSKHDFIVVEFYAPWCGHCKKLAPEYEKAASILSSHDPPVVLAKIDANEEKNKEVASEYDVRGYPTIKIFRNGGKNVQEYKGPREAEGIIDYLKKQSGPASTEIKSADEATAFIGENKVAIVGVFPKFSGEEFDNFSALAEKLRSDYDFGHTLNAKHLPKGESSVEGPVVRLFKPFDELFVDFKDFHGEALEKFVEESSIPVVTVFNNDPSNHPFVVKFFNSPNAKAMLFINFTAESAESFKSKYREAAEQFKQQGVSFLVGDVESSQGAFQYFGLKEDQVPLIIIQHNDGKKFFKPNLEADHISTWLKAYKDGSIAPFVKSEPIPETNNEPVKVVVGDSLQDIVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSYQNDADVIIAKLDATANDIPSDTFDVQGYPTVYFRSASGKISQYDGNRTKDDIIEFIEKNRDKHAQAQQEQVKDEQKTTGKDEL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01116 520 SUPERFAMILY Thioredoxin-like 257 389 IPR036249 -
Cca03g01116 520 CDD PDI_b'_family 275 371 - -
Cca03g01116 520 PANTHER PROTEIN DISULFIDE ISOMERASE 17 511 - -
Cca03g01116 520 ProSitePatterns Thioredoxin family active site. 67 85 IPR017937 -
Cca03g01116 520 Gene3D Glutaredoxin 380 517 - -
Cca03g01116 520 TIGRFAM pdi_dom: protein disulfide-isomerase domain 52 155 IPR005788 GO:0003756
Cca03g01116 520 TIGRFAM pdi_dom: protein disulfide-isomerase domain 397 496 IPR005788 GO:0003756
Cca03g01116 520 Gene3D Glutaredoxin 155 261 - -
Cca03g01116 520 SUPERFAMILY Thioredoxin-like 48 158 IPR036249 -
Cca03g01116 520 CDD PDI_a_PDI_a'_C 391 493 - -
Cca03g01116 520 SUPERFAMILY Thioredoxin-like 161 260 IPR036249 -
Cca03g01116 520 SUPERFAMILY Thioredoxin-like 359 500 IPR036249 -
Cca03g01116 520 Pfam Thioredoxin-like domain 184 368 - -
Cca03g01116 520 ProSiteProfiles Thioredoxin domain profile. 370 498 IPR013766 -
Cca03g01116 520 Pfam Thioredoxin 48 154 IPR013766 -
Cca03g01116 520 Pfam Thioredoxin 393 495 IPR013766 -
Cca03g01116 520 MobiDBLite consensus disorder prediction 496 520 - -
Cca03g01116 520 ProSiteProfiles Thioredoxin domain profile. 28 157 IPR013766 -
Cca03g01116 520 PANTHER PROTEIN DISULFIDE-ISOMERASE 17 511 - -
Cca03g01116 520 CDD PDI_b_family 160 256 - -
Cca03g01116 520 Gene3D Glutaredoxin 262 379 - -
Cca03g01116 520 ProSitePatterns Thioredoxin family active site. 412 430 IPR017937 -
Cca03g01116 520 Gene3D Glutaredoxin 34 154 - -
Cca03g01116 520 PRINTS Thioredoxin family signature 66 74 - -
Cca03g01116 520 PRINTS Thioredoxin family signature 74 83 - -
Cca03g01116 520 PRINTS Thioredoxin family signature 119 130 - -
Cca03g01116 520 TIGRFAM ER_PDI_fam: protein disulfide isomerase 48 520 IPR005792 GO:0003756
Cca03g01116 520 CDD PDI_a_family 49 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01116 Cca-Chr3 27013620 27018025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01116 K09580 - gmx:100170705 919.842