Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01112 ATGAGAATCCGCAACTCCTCCTTCTCCTCCGCGATCTTAATCCTATTAATAGCTCTCGTGGACTCGGCGGTTTCCCTCGCCGACGAGATACCTTCCGCTGCCTACGACCGCGTCCTGTTCCCGGACCGCCGGTGCCAGAAGACGGCGTCGGAGAACAAGACGCGGCGGGGAGCCTCGCCTCCGGCGGCGGAGTGCGAGGTGTGGAGTCCGGCGTGCTCGGAGGCGGTGCTGAGCGTGGCGCGGCTGGCGGAGACGGCGGAGTGGCTGCGAGGAGTTCGGCGGAAGATCCACGCGAATCCGGAGCTGGCGTTTGAGGAAATCGAGACGAGTGGTTTGATAAGAGAGGAGTTGGATCTGATGGAAGTTAGTTATCGGTACCCTCTCGCTAAGACCGGTATTCGAGCCTCGATCGGCACAGGTGGTCCGCCTTTTGTTGCGATCAGAGCTGACATGGACGCACTTCCCATCCAGGAAGCTGTGGAATGGGAGTACAAATCTAAAGTTGCCGGCAAAATGCATGCTTGTGGGCACGACGCACATGTGGCTATGCTTATCGGCGCTGCCAAGATATTGAAAACACGAGAGCATTTATTAAAGGGAACTGTGATTCTGTTATTCCAGCCAGCAGAGGAAGCAGGTAATGGAGCAAAACGAATGATGCAAGACGGTGCTTTGGAGAAGGTGGAGGCTATATTTGCAGCTCATGTGTCCCATGAACATCCAACTGGTATAATTGGGTCAAGGCCTGGACCCCTCCTTGCTGGCTGTGGGTTCTTCAGAGCTGTCATTAGTGGCAAGAAGGGTCTTGCTGCCAATCCTCACCATTCTGTTGATCCTGTTTTAGCCGCTTCAGCTGCAGTTATCAGCTTACAGGGCATTGTCTCCCGCGAATCAAATCCACTGGATTCACAGGTTGTCTCTGTAACTTCGTTTAATGGAGGCAACAATCTTGACATGATACCCGACACAGTGGTCCTCGGTGGGACTTTCAGAGCTTTCTCAAACGCCAGCTTTTATCAGCTACTTGAAAGGATAGAGCAGGTGATTGTGGAACAGGCCAGTGTCTACAGATGCGTTGCGGAAGTTGACTTCTTTGAAAAGGAGTACACTATTTACCCCCCCACAGTGAATGATGACCGAATGTATGAGCATGTGAAGAAGGTGTCGATTGATTTGCTGGGCCAGAAGAATTTCAGGGTAGTTCCACCTATGATGGGTGCTGAAGATTTCTCTTTCTACTCTGAGGTGGTTCCCTCAGCATTCTTCTACATAGGGATAAGGAATGAAACGCTGGGGTCTACTCATACGGGTCATTCTCCACATTTCATGATTGATGAAGATGTTCTACCAGTAGGTGCTGCTGTTCATGCTAGTATTGCAGAGAGGTACCTCATTGAACATGGCTGA 1407 0.5174 MRIRNSSFSSAILILLIALVDSAVSLADEIPSAAYDRVLFPDRRCQKTASENKTRRGASPPAAECEVWSPACSEAVLSVARLAETAEWLRGVRRKIHANPELAFEEIETSGLIREELDLMEVSYRYPLAKTGIRASIGTGGPPFVAIRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKTREHLLKGTVILLFQPAEEAGNGAKRMMQDGALEKVEAIFAAHVSHEHPTGIIGSRPGPLLAGCGFFRAVISGKKGLAANPHHSVDPVLAASAAVISLQGIVSRESNPLDSQVVSVTSFNGGNNLDMIPDTVVLGGTFRAFSNASFYQLLERIEQVIVEQASVYRCVAEVDFFEKEYTIYPPTVNDDRMYEHVKKVSIDLLGQKNFRVVPPMMGAEDFSFYSEVVPSAFFYIGIRNETLGSTHTGHSPHFMIDEDVLPVGAAVHASIAERYLIEHG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01112 468 CDD M20_IAA_Hyd 89 464 IPR044757 GO:0009850|GO:0016787
Cca03g01112 468 PIRSF Amidohydrol_AmhX 77 467 IPR017439 GO:0016787
Cca03g01112 468 TIGRFAM amidohydrolases: amidohydrolase 90 452 IPR017439 GO:0016787
Cca03g01112 468 SUPERFAMILY Bacterial exopeptidase dimerisation domain 255 364 IPR036264 -
Cca03g01112 468 SUPERFAMILY Zn-dependent exopeptidases 81 466 - -
Cca03g01112 468 Gene3D Zn peptidases 92 449 - -
Cca03g01112 468 Pfam Peptidase family M20/M25/M40 146 461 IPR002933 GO:0016787
Cca03g01112 468 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 36 467 - -
Cca03g01112 468 Pfam Peptidase dimerisation domain 259 353 IPR011650 -
Cca03g01112 468 PANTHER PEPTIDASE M20 FAMILY MEMBER 36 467 IPR017439 GO:0016787
Cca03g01112 468 Gene3D - 254 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01112 Cca-Chr3 26953804 26965728 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01112 K21604 - gmx:100785666 836.639