Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01108 ATGAAGAAGAGAAAAAGAACCCCAAAACCGCTACCGCTACCGCCACCTCCCTCGACGCCTCCAACTCCACAAACCCAAGCCCGCCACTCCATCAACACTGCAAAAGCCCAAGCCCAATCCTGGGCCCCTCTCAATCTCCCCAAGGACGAACTCTCCTTGCCCCTCACCTTCCCCACGGGCCAAACCTTCCGCTGGAAAAACACTGCCCCTTCTCAATACACCGGCGTCGTTGCCTCCCACCTCGTATCCCTCAAGCACCTTCAAAACGGCGACGTTTCCTACTGCCTCCACTCCCGCTCCCACTCCCACTCCGACAACGCCAGAACGGCCTTGCTCGATTTCCTAAACGCCACCGTTTCTCTCGCTGACTTGTGGAACGCTTTTTCCGCTTCCGATGCGAGGTTCGCCGAACTCGCCGGCCACTTAAGCGGTGCACGAGTTCTCCGGCAAGACCCTTTGGAGTGCCTGATTCAGTTTTTGTGCTCTTCCAATAACAACATCGGAAGAATCACCAAGATGGTCAACTACGTGTCGTCCCTCGGAACCCACGTGGGAGACTTCCACGATTTCCCTACTTTGGAACAGCTTTCGTCGCTCTCAGAGCAACAACTCAGAGACGCTGGTTTTGGTTACAGGGCTAAATATATAATTGGGACGGTTAATGCTTTGCAATCAAAACCTGGTGGAGGGGAAGAATGGCTTCGCTCTCTTCGTAAGTTGGATCTTCATGACGTTATATCTGAACTTTCTAAGTTACCCGGTGTGGGTCCTAAAGTGGCTGCTTGCGTTGCTCTCTTCTCGCTTGATCAACACCATGCCGTTCCTGTTGACACCCACGTCTGGCGGATTGCCACAAAGTATCTCTTACCTGAGCTTGCAGGTTCCCAGTTGACGCCAAAGCTCTGCGATCGTGTTGCAGAGGCATTTGTATCGAAATATGGTAAATATGCTGGCTGGGCGCAGACTCTGTTATTCATAGCTGAATTACCTTCGCAAAAGGCCATCCTACCTTTACATTTGCGGACAATCAAACAACGTAATTCTGCAAAGATGGGAGACAGTGAAGAAGAAGTTGAGTGA 1080 0.5176 MKKRKRTPKPLPLPPPPSTPPTPQTQARHSINTAKAQAQSWAPLNLPKDELSLPLTFPTGQTFRWKNTAPSQYTGVVASHLVSLKHLQNGDVSYCLHSRSHSHSDNARTALLDFLNATVSLADLWNAFSASDARFAELAGHLSGARVLRQDPLECLIQFLCSSNNNIGRITKMVNYVSSLGTHVGDFHDFPTLEQLSSLSEQQLRDAGFGYRAKYIIGTVNALQSKPGGGEEWLRSLRKLDLHDVISELSKLPGVGPKVAACVALFSLDQHHAVPVDTHVWRIATKYLLPELAGSQLTPKLCDRVAEAFVSKYGKYAGWAQTLLFIAELPSQKAILPLHLRTIKQRNSAKMGDSEEEVE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01108 359 SMART endo3end 161 329 IPR003265 GO:0006284
Cca03g01108 359 MobiDBLite consensus disorder prediction 1 35 - -
Cca03g01108 359 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 44 156 IPR012904 GO:0003684|GO:0006289|GO:0008534
Cca03g01108 359 Gene3D Hypothetical protein; domain 2 151 270 - -
Cca03g01108 359 Pfam HhH-GPD superfamily base excision DNA repair protein 157 287 IPR003265 GO:0006284
Cca03g01108 359 CDD ENDO3c 154 326 IPR003265 GO:0006284
Cca03g01108 359 Gene3D - 27 115 - -
Cca03g01108 359 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 39 344 - -
Cca03g01108 359 SUPERFAMILY DNA-glycosylase 151 327 IPR011257 GO:0003824|GO:0006281
Cca03g01108 359 PANTHER N-GLYCOSYLASE/DNA LYASE 39 344 - -
Cca03g01108 359 SUPERFAMILY TATA-box binding protein-like 38 150 - -
Cca03g01108 359 Gene3D - 124 329 IPR023170 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01108 K03660 - gmx:100789749 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01108 03 26814757 26816473 Cca03g01108 03 26814757 26816473 ECH