Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01098 ATGAAGACACCCCACTTACCTTTCATGTTGGTTCTAGTGCTAGTGTTAGCCTCACGCTGTGCAGCAGAAGAGGCTTCCACTGCAGAAAGCATCATCTTCACCACACTTGGGAGAGCCTTCTACGCCTTCGACATCTATTCCCTCCCAATTCATGATCACCCACAAACTCTCACACCCAACCAAGAACTTCAACTCACCGATGGCCACTCCGTTAACTTCAACGGCCACTTCATCCCCAACACTTCCTCTATCCAACTCCCCACTCACTCCCCTCCTCTCCAACTCGTTTACATCACCGAGAGAAACGGCTCCCCCACCATTTACTACGACGCCCTTTACACTTGCACAACCACAAATCTAGACACAAGAATCCAAGTCCCTCTGTTACCCAACAGCCCCAGCGCCACTTCTAAAGTTTCCATCAAAGACAAGCCCAGCGTCACCCCCGATGGACAATATTTACTATACGTATCCACCCACGAGGACCCGGGTGTTCCACGGGCCAGCTGGGCCGCAGTTTACTCCACACACCTCCAATCGGGCCTCACCCACAGGCTCACCCCTTACGGTGTGGCTGACTTCAGCCCAGCCCTCTCCCCCTCCGGCCTCTGGACCGCGGTTGCTTCCTACGGCCCCCACGGCTGGGCCGGCGAAGTAGAGGATCTCACAACAGACATCTACGTTTTCCTCACTCGCGACGGAACTCACCGAGTCAAAATCGTCGAACACGGCGGCTGGCCCGCCTGGGTGGACGATCGCACCCTTTACTTCCACCGAAGAGGCCACGACCAGTGGTGGAGTATTTACAGAGCCATTCTCCCCTCCAACGCTCCCCTTTCCACCGACTCGGTCCTCGTCGAACGAGTCACCCCGCCGGGTCTCCACGCGTTCACACCCGCCACCTCACCGGGGAACAAAAACTTCATCGCCGTGGCAACAAGAAGGGCAGGCTCCGCTTTTCGGCACATCGAGTTATTCGATCTGGTTAAAAAGGAATTCACGGAGCTAACTCGGTTGGTCTCGCCTCGTTCTCACCACCTCAACCCCTTCCTCTCACCCGATTCAACTCGGGTGGGGTACCACAAGTGCAGAGGAGAACCCAACGCTCATAGCAGCCCCCAGTTTCTGCTCGAGAATGTTCGGAGCCCTGTCCCGAATCTAACTCTATTCCGGTTCGTGGGTTCCTTCCCGGTTTTCTCACCCGCGGGTGACCGAATCGCGTACGTGGAGATGCCTGGGGTTTATGTAGTGAACCGGGACGGTTCGAACCTGCGTAAGGTTTCAAACGCGATGGCCTTTTCCACTGCCTGGGATAGGGTTCGAGCGGGTGTGATATACACTGCGATTGGGGAAACATTTGCTTCGGAGAGCTCGCAAGTGGATATAGTATCCATGGACGTGGACGAGGGAAACAGCGTGAAGAGGTTGACCTTGGACGGGAAGAACAACGCGTTTCCGTCTCCCTCGCCGGACGGGAAATGGATCGTGTTCCGGTCGGGTCGTTCGGGTCATAAGAATCTTTACATAATGGATGCGGTGGGTGGGGAGAGGAAGGGGCTTCGAAGGTTGACGGAGGGTCCTTGGACGGACACGATGTGCAACTGGTCACCGGACGGGGAATGGATCGCCTTTGCATCTGACCGGCATGACCCGGGTAGCGGGAGCTTCGAGCTGTACCTGATCCGCCCAGACGGAAGCGGGTTGAGGAAGTTGGTGGAAAGCGGGTCGGGTGGGAGGGCGAACCACCCGTATTTTAGCCCGGATGGGAAGAGATTAACGTTTACTTCGGACTATGCGGGGATATCTGCGGAGCCAATCTCGAACCCGCATCACTACCAGCCTTATGGTGAAATCTTCAGCGTTAGATTGGATGGTTCGGACATCAAGAGGTTGACTCATAACTCTTACGAGGATGGAACACCGGCTTGGTCCCCCAAGTACATACCTCCGCTGAATATTGAGAAAGCCAAGGGAGGACCCTATTGCTCTTTTGAAGACTGTCATTGGCTCAACAATATGCCAAATTGGAGGGCTGTGGCTGCTTCTAGGCCTCACTGTGCTGCTCTGTAA 2070 0.5541 MKTPHLPFMLVLVLVLASRCAAEEASTAESIIFTTLGRAFYAFDIYSLPIHDHPQTLTPNQELQLTDGHSVNFNGHFIPNTSSIQLPTHSPPLQLVYITERNGSPTIYYDALYTCTTTNLDTRIQVPLLPNSPSATSKVSIKDKPSVTPDGQYLLYVSTHEDPGVPRASWAAVYSTHLQSGLTHRLTPYGVADFSPALSPSGLWTAVASYGPHGWAGEVEDLTTDIYVFLTRDGTHRVKIVEHGGWPAWVDDRTLYFHRRGHDQWWSIYRAILPSNAPLSTDSVLVERVTPPGLHAFTPATSPGNKNFIAVATRRAGSAFRHIELFDLVKKEFTELTRLVSPRSHHLNPFLSPDSTRVGYHKCRGEPNAHSSPQFLLENVRSPVPNLTLFRFVGSFPVFSPAGDRIAYVEMPGVYVVNRDGSNLRKVSNAMAFSTAWDRVRAGVIYTAIGETFASESSQVDIVSMDVDEGNSVKRLTLDGKNNAFPSPSPDGKWIVFRSGRSGHKNLYIMDAVGGERKGLRRLTEGPWTDTMCNWSPDGEWIAFASDRHDPGSGSFELYLIRPDGSGLRKLVESGSGGRANHPYFSPDGKRLTFTSDYAGISAEPISNPHHYQPYGEIFSVRLDGSDIKRLTHNSYEDGTPAWSPKYIPPLNIEKAKGGPYCSFEDCHWLNNMPNWRAVAASRPHCAAL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01098 689 SUPERFAMILY DPP6 N-terminal domain-like 145 429 - -
Cca03g01098 689 Pfam WD40-like Beta Propeller Repeat 474 509 IPR011659 -
Cca03g01098 689 Pfam WD40-like Beta Propeller Repeat 144 166 IPR011659 -
Cca03g01098 689 Pfam WD40-like Beta Propeller Repeat 521 559 IPR011659 -
Cca03g01098 689 Pfam WD40-like Beta Propeller Repeat 578 597 IPR011659 -
Cca03g01098 689 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 28 666 - -
Cca03g01098 689 Gene3D - 256 446 IPR011042 -
Cca03g01098 689 Gene3D - 447 550 IPR011042 -
Cca03g01098 689 Gene3D - 552 647 IPR011042 -
Cca03g01098 689 Gene3D - 94 255 IPR011042 -
Cca03g01098 689 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 28 666 - -
Cca03g01098 689 SUPERFAMILY Tricorn protease N-terminal domain 395 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01098 Cca-Chr3 26671078 26673792 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01098 - - gmx:100791865 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01098 03 26671078 26673792 Cca03g01098 03 26671078 26673792 ECH