Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01096 ATGGTTGAGTCCAAGGATGGTGTTGCCAACAAGTATCATCACCAAACATTTAACGTCTCTATTGAGATGCATCAACAAGGAGGCTCCAAGTGTTTCGACGATGATGGTCGCCCCAAAAGAAACGGGACGGTGTGGACTGCAAGTGCACACATAATAACTGCAGTGATAGGATCTGGGGTGCTGTCTCTGGCTTGGGCCATAGCTCAGCTCGGATGGATTGCTGGTCCTCTTGTTATGGTTCTCTTCTCTGCCATAACTTACTACACCTCCATTCTTCTCTCTGATTGTTATCGTACTGGTGATCCTCTCACTGGCAAGAGAAACTACACTTACATGGATGCTATTCATTCTAACTTTGGTGGCAATGCCTTTAAGGTCAAAATGTGTGGGCTAGTACAGTATATTAACCTTTTCGGAGTAGCCATTGGTTACACTATAGCGGCTTCCATTAGCATGATGGCAATCGAAAGATCTAATTGTTTCCACAAGAGTGGAGGGAAAGATCCATGTCATATGAACAGCAATGTCTACATGATTTCATTTGGTATTGTGCAAATTATTTTCTCTCAAATTCCAGGCTTCGATCAATTATGGTGGCTCTCCATTGTAGCTGCTGTCATGTCCTTCACATATTCCACTATTGGCCTAGGACTGGGTGTTGGAAAAGTTATAGAAAACAGAAGAGTTGGGGGAAGCCTAACAGGTATAACCGTTGGTACTGTGACACAAATTGATAAAGTTTGGAGGACCATGCAAGCTCTTGGTGACATAGCCTTTGCCTATTCATACTCCTTAATCCTTATAGAAATTCAGGACACAGTGAAATCCCCTCCATCAGAGTCAAAAACAATGAGAAAGGCTACTTTCATCAGTGTTTCAGTGACCTCCATTTTCTACATGCTTTGTGGCTGCTTTGGTTATGCTTCTTTCGGAGATTCAAGTCCTGGAAACCTTCTCACTGGATTTGGCTTCTACAACCCTTTCTGGCTCCTTGACATAGCTAATTCTGCCATAGTGATCCACCTTGTTGGTTCATACCAAGTTTACTGCCAACCCCTCTTTGCTTTCGTTGAAAAACACGTGGCACGTAGATTCCCAAATAGTGTTTTTGTGAACAAAGAAATTGAAATACCTCTCCCTGGTTACCAACCCTACAAGCTGAACCTCTTCCGATTGGTTTGGAGGACAATATTTGTGGTGGTGAGCACTGTGATATCAATGCTCCTCCCATTCTTCAATGACATAGGGGGGCTTCTTGGAGCTCTTGGATTTTGGCCACTCACTGTTTATTTCCCAGTGGAAATGTACATTGTTCAAAAGAAAATACCAAAGTGGAGCACAAAGTGGATATGCCTCCAAATACTTAACATATCTTGCCTTTTGATCACTATAGGAGCTGCAGCTGGATCTATTGCTGGGATCGTCATTGACCTTCAAACTTACAAGCCTTTCAAGACCAACTATTGA 1467 0.4288 MVESKDGVANKYHHQTFNVSIEMHQQGGSKCFDDDGRPKRNGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPLVMVLFSAITYYTSILLSDCYRTGDPLTGKRNYTYMDAIHSNFGGNAFKVKMCGLVQYINLFGVAIGYTIAASISMMAIERSNCFHKSGGKDPCHMNSNVYMISFGIVQIIFSQIPGFDQLWWLSIVAAVMSFTYSTIGLGLGVGKVIENRRVGGSLTGITVGTVTQIDKVWRTMQALGDIAFAYSYSLILIEIQDTVKSPPSESKTMRKATFISVSVTSIFYMLCGCFGYASFGDSSPGNLLTGFGFYNPFWLLDIANSAIVIHLVGSYQVYCQPLFAFVEKHVARRFPNSVFVNKEIEIPLPGYQPYKLNLFRLVWRTIFVVVSTVISMLLPFFNDIGGLLGALGFWPLTVYFPVEMYIVQKKIPKWSTKWICLQILNISCLLITIGAAAGSIAGIVIDLQTYKPFKTNY 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01096 488 Pfam Transmembrane amino acid transporter protein 41 475 IPR013057 -
Cca03g01096 488 PANTHER OS05G0424000 PROTEIN-RELATED 11 482 - -
Cca03g01096 488 PANTHER AMINO ACID CARRIER 11 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01096 Cca-Chr3 26645062 26647656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01096 13 488 Organic Solute Cotransporters AT1G77380 73.529 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01096 K24917 - gmx:100779910 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01096 03 26645062 26647656 Cca03g01096 03 26645062 26647656 ECH