Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01094 ATGATTAAGCTTTGTTCCCATAGAAATAAACATTTATACAAATGGGTGTTGTTTGCGAAAATGCACATCACAAGTGAGTCGGTTCAGGAGGTTGGAGAAGTAAGCGAAAGAGTGTGCAAGGTCATGATGACGTGTCCCACTCTGGCACTTGACACTGCTCTTGACCAAACCGGAGTTAGAGTGTCCCCTGAAATTGTGGAAAACGTTCTCAAGAGGTTCGAGAATGCTGGCATGTCAGCATTTAGGTTTTTCGAATGGGCAGAGAATCAGAAAGGATACTCACACAGCATAAGAGCATACCACTTGATGATTGAGTCTTTGGCCAGGATTAGGCAGTACCAGATTATGTGGGACCTTGTTAATGTCATGAGGAAAAAGGGTATGCTAAATGTTGAAACTTTTTGCATCATGATGCGAAAATATGCTAGGGCTAACAAGGTTGATGAGGCTGTTTACACCTTTAATGTTATGGATAAGTATGGTGTGGTTCCAAATCTAGCTGCATTTAATGGCTTGCTAAGTGCCTTGTGCAAGTCCAACAATGTGAGGAAGGCTCAGGAGATTTTTGATGGCATGAAGGGCCGGTTTGTGCCGGACCCCAAGACCTACAGCATTTTGCTTGAGGGGTGGGGGAAGGCTCCCAATCTTCCCCGGGCAAGAGAGGTTTTTAGAGAGATGGTTAGTGCGGGGTGTGATCCTGATGTTGTTACTTATGGTATAATGGTTGATGTTCTTTGCAAAGCTGGAAGGGTTGATGAGGCTGTTGAGGTTGTGAAGGAAATGGATGCCAGCAATTGCCGGCCAACGTCTTTCATTTATAGTGTCCTGGTTCATACCTATGGAGTGGAGCACCGGATTGAAGATGCTATTGATACGTTCCTGGAGATGGCAAAGCAGGGAATCAAGGCTGATGTTGTGGTGTATAATGCCTTGATTGGTGCCTTTTGTAAGGTGAATAAATTTAAAAATGTGCATAGGGTCTTGCAGGAGATGGAAGGCAATGGTGTTGCTCCTAATTCGAGGACCTGCAATGTTATCATAAGCAGTATGATTGGCCAGGGACAGACTGATAGAGCTTTCAGGGTCTTCTGCCGGATGATCAAGATATGTGAACCGGATGCTGACACTTACACAATGATGATAAAAATGTTTTGTGAGAAGAATGAACTTGAGATGGCTCTGAAAATATGGAAGTATATGAAGAAGAAACAATTTGTCCCAAGCATGCACACGTTTTCTGCCCTTATCAAGGGGTTGTGTGAAAAGGGCGATGCCGCAAAGGCTTGTGTTGTGCTGGAAGAGATGATGGAGAAGGGAATTCGACCATCACGTGTTACATTTGGGAGGTTAAGACAGCTGCTTTTAAAGGAAGGGAGAGAGGATGTGCTCAAATTTCTTCATGAGAAAATGAATCTTCTTGTGAAGGAGCCTTTATATGATTAA 1443 0.4373 MIKLCSHRNKHLYKWVLFAKMHITSESVQEVGEVSERVCKVMMTCPTLALDTALDQTGVRVSPEIVENVLKRFENAGMSAFRFFEWAENQKGYSHSIRAYHLMIESLARIRQYQIMWDLVNVMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYGVVPNLAAFNGLLSALCKSNNVRKAQEIFDGMKGRFVPDPKTYSILLEGWGKAPNLPRAREVFREMVSAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDASNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKQGIKADVVVYNALIGAFCKVNKFKNVHRVLQEMEGNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKICEPDADTYTMMIKMFCEKNELEMALKIWKYMKKKQFVPSMHTFSALIKGLCEKGDAAKACVVLEEMMEKGIRPSRVTFGRLRQLLLKEGREDVLKFLHEKMNLLVKEPLYD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01094 480 PANTHER OS03G0761300 PROTEIN 9 477 - -
Cca03g01094 480 Gene3D Tetratricopeptide repeat domain 44 193 IPR011990 GO:0005515
Cca03g01094 480 Gene3D Tetratricopeptide repeat domain 194 262 IPR011990 GO:0005515
Cca03g01094 480 Gene3D Tetratricopeptide repeat domain 263 328 IPR011990 GO:0005515
Cca03g01094 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 477 - -
Cca03g01094 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Cca03g01094 480 Gene3D Tetratricopeptide repeat domain 329 478 IPR011990 GO:0005515
Cca03g01094 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Cca03g01094 480 Pfam PPR repeat 272 301 IPR002885 -
Cca03g01094 480 Pfam PPR repeat 133 162 IPR002885 -
Cca03g01094 480 Pfam PPR repeat family 304 349 IPR002885 -
Cca03g01094 480 Pfam PPR repeat family 164 209 IPR002885 -
Cca03g01094 480 Pfam PPR repeat family 372 420 IPR002885 -
Cca03g01094 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Cca03g01094 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Cca03g01094 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Cca03g01094 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Cca03g01094 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Cca03g01094 480 TIGRFAM PPR: pentatricopeptide repeat domain 133 165 IPR002885 -
Cca03g01094 480 TIGRFAM PPR: pentatricopeptide repeat domain 376 408 IPR002885 -
Cca03g01094 480 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Cca03g01094 480 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Cca03g01094 480 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Cca03g01094 480 TIGRFAM PPR: pentatricopeptide repeat domain 342 368 IPR002885 -
Cca03g01094 480 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Cca03g01094 480 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Cca03g01094 480 TIGRFAM PPR: pentatricopeptide repeat domain 168 195 IPR002885 -
Cca03g01094 480 SUPERFAMILY HCP-like 208 440 - -
Cca03g01094 480 Pfam PPR repeat 230 261 IPR002885 -
Cca03g01094 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01094 Cca-Chr3 26624177 26627708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01094 146 461 Glycosyltransferase AT1G05670 26.730 4.44e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01094 - - gmx:100790096 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01094 03 26624177 26627708 Cca03g01094 03 26624177 26627708 ECH