Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01092 ATGGAGTTGCCGGAGTGCCCAGTGTGCCTTCAATCCTTCGACGATCGCGACGCAGTTCCTCGTGTTCTACCGTGTGGACACTCCGTTTGCGAAGCTTGCCTTGCGGAGTTTCCACAGCGGTACCCGAACACTATTCGGTGCCCCGCGTGCACACAACTCGTGAAGTACCCTTCACAACAAGGTCCTTCATCTCTTCCCAAAAACATCGACCTCCTCCGGCTCTGCCTCCAACACTCCCCTTCTTCTCAGAAACCGAATCAACGGTCCACGATCAACGCTTGTTACGATCACGCTCCGTTCTGGTCCCCTGAGTTCTATGCTGCATGGAAGGATTGGATTCTCCCGCACGACGCCGTTTCAGTCGATGATAAGGGTTTTGGTCTGTTCGGTTCTTCGCCCAAGGGTAGGGTTTGCTTTGGAGTTAACCGCAGCGTGAGTCTTGTTCCTATTGTTTGTTTCCCTCCAGGGGATCATTCCAAGTTTAGGTTTAGTTACGTTGCGCGGGTGATTAAGTGTTTGGAGGGGATGAACGAGGTGGCGAGGGAGGAGTTGGCGTTGATTCTCGAAGCTTCCGTGAGGCAGGGGAGGATGTGTAGGGTTTATGGGTTGTGGAGTGAGGGGGTGGAGGGGCCTCTGTATATGGTGTGTGAGAGGCAATGTGGTAATCTTTTGGACAAGTTTGGGGAATTGGGAAATGGGTTTGTTGGTGGGAATGAGGGTGGTTTGAAGTTGGATGCTGGTGGGGTTTTCAGTTTTTTAATGATTGGGAAGGGTCTATGTGAAGCTTTGCTTGCTTTGCACTTGGAAGGTTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTTGGTGGCATTTGTGTTGATTTGAATGAGGCTTTGGTGATGAGAAAGAAGTTTGTGAATGCTGTTTCCCGCATACATGAAGAAGAAGCAGTGTGGGAGGATTGCTTGGAGAATGAGTTTTTCGTAAGTCCGGAGGTTTTGTATGAGTTGTTGCACAAGAGGGTTGCTACTTTGGATAGTGGGCATTCAAGAGTTCCAATTGGGTATGGCTCGGATGTATGGTCATTGGCTTGTGTACTGCTGCGGCTTCTTATTGGAAATGCACTGCCTCGGAATACCTTGGAAATGAATGGAGAGAATGGCAGTGATATCTCAGCTAGTTACATGTGCTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTAGGCTCTGAGTATCTGTCACTGAGGCAGACTCTTTGCAAATGTCTGGACGTCAATCCAGGAAACCGTCCAGATGTGGTGGATGTGAGGAAGTGCATTCAGGAAATGTTAGTGAAACCTCAATTTGATATTTTGGGCAACTTGGAGGTCACGATAAGTGGGAACAGCTCAGGTCACTGCTTGGTTTTAGGGGAGTTGTGTTTGTTGCCTAAGGAAAGGTCTAATGAACTGAGTGAACATGAGTTGAAGGAGAAAGAAATTGGCAGCCAACCAAATTTTGTTCAAGATGTCAAAGACAAATCTGATGAAGACTTTGCTGCTGGCTTATCTAAGGGAATGACTGAACTCAAAGATCTGCGAGGCCATCTTGATTGTATCAGTGGATTGGCTGTTGGGGGAGGGTACCTACTTAGCTCCTCATTTGATAAAACTGTTCATGTATGGTCATTGCAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATGTTTATCTGGGGAATGGCTGCCCCTCTTAGGCAAGATCCCTTGAGAAAATGGTATGAGAAGAAGGATTGGCGTTTTAGTGGTATCCATTCCTTGGCAGTTTCCAGAAATCATTCTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCATGGTCATATAAGGATGAAACTTTGATATGCACAATGACTGGACATAGATCTGTAGTTTCCACACTTGCTGTATGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGTACAATTCGGTTGTGGAGTCTTAATGACCACAGTCCATTGACAGTTCTGGGGGAAGATACGCCTGCAGAGATGAAGCCTATCCTGGCTATTACTGTAGATAGGCATTTGCTTGTTGCGGCATATGAGAATGGATGCATTAAGGTCTGGAGAAACGATGTGTTCATGAATTCCAAAACATTGCACAATGGGGCCATCTTTGCTATGAGTATGCATGGAAAATGCCTATATACAGGAGGTCGGGACAAAAATGTTAATATACAGGAATTATCTGGAGATGAGTTTGAACTGGACGTCAAAGCATATGGATCCATTCCTTGCAGTTCTGTTGTAACAGCCATATTATGCAACCAAGGAAAACTGTACGTTGGATATGCTGACAAGTCTATCAAGGAAAATCTCGGTGGCGTTCAAAAGCGTTTCACCGACTTCACGAGCTTGAACTACTGGGTTGTTCGCGACTACTACCGTCTTGTCAGCTCCGTCAACGCCTTCGAGCCGCAGATTCAGGCGCTCTCCGATGAACACCTGGCCGCCAAAACCCCCGAGTTTCGCCGCCGCCTCGAGCGAGGGGCTACGCTTGCCGATATCCAAGCTGAGGCTTTCGCTGTTGTTCGTGAAGCTGCATGGAGGAAACTCGGAATGCGCCATTTCGATGTTCAGATTATTGGTGGAGCGGTGCTGCATGATGGTTCCATTGCTGAGATGAAAACGGGGGAGGGTAAAACCTTGGTTTCTACGCTAGCGGCTTATCTTAATGCGCTGACCTCTGAGGGTGTTCATGTGGTAACTGTCAATGATTATTTGGCTCAACGTGATGCTGAATGGATGGGGCGTGTTCATCGTTTTTTAGGTCTCTCCGTTGGTCTTATTCAGAGAGGAATGAATTCCGAAGAACGGAGATTCAACTACAGATGCGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGCGGGATAATCTTGCTGGAACTAGAGAACAGCTTGTAATGAGATGGCCAAAACCCTTTCATTTTGCAATAGTTGATGAAGTGGATTCTGTCCTGATAGACGAAGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGATTCCCTGTTGCTGCAAAAGTAGCTGAACTTCTTATACAGGGCATTCATTACAAAGCAGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACTAATGATCTTTGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGCCGAGACGTGCAATACATTGTTAGAGATGGGAAGGCTTTGATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGTATTCATCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTAGCACAGATCACATACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTGAAAATGTTTCGAATGCCAGTGATTGAAGTGCCCACAAATCTTCCTAATGTTCGAAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGTCGAGAAGTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGGACAACTAGTGTAGAAAATTCAGAACTTTTGTCTGGTCTGCTTAGGGAATGGAATATTCCTCATAATGTTCTGAATGCTCGTCCCAAGTATGCTGCAAAAGAAGCTGAAATTGTTGCACAGGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGAGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCTTACTTTCTTTTTTGACGCAAGAGGATCCAAATGCTGAACTTGCAGATGAGTCTATTTCACAGAAGGTGCTTCAAAAGATAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGACAGCCTTAATGGCAAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCTAAATCTTTTATCTTGGAGGCTGTTGAAATGAGTCTTTCATACAGTTTGGAGGAGCTGGAGAAGCTTGCTAATGAGGAATCTGAGATCTACCCTCTTGGTCCAACTGTAGCACTTGCCTATCTGTCAGTTCTGAAGGATTGTGAAGAACACTGCTTGCTTGAAGGTTCCGAGGTAAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTACGTGGCAGAGCAGGAAGACAGGGGGATCCAGGATCAACACGATTTATGGTTAGCTTGCAGGATGAGATGTTCCAGAAGTTCAATTTTGATACTGAATGGGCAGTGAGACTTATCTCAAAGATTACGAATGATGAGGATCTGCCAATTGAGGGTGATGCAATTGTAAAGCAGCTTTTGGCGCTGCAAATCAATGCAGAAAAGTTCTTCTTTGGCATACGAAAGAACCTTGTTGAGTTTGATGAAGTATTGGAGGTGCAACGCAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACATGCAAGCAGTGGTGGACGAGATTGTCTTCAGTAATATTGATCCACTGAAGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTGAAGGAGTTTGTCACTGTTGGTGGAAAGCTGTTGCAAGAATCTTTTGGAGTAATTAGTGATGACACTTTGCTAAATTCACTCGGGCTACTGAATGATTTGAGTTCAGTTGATATTGTCAACTTTTCCCTTCCAAATTTGCCAGCACCTCCAAATGCCTTCAGGGGAATTCGTAGAAAGAGTTCTTCATTAAGACGATGGCTTGCTATTTGCAATGATGATTTAATTGGGAATGGGAAATATCAAACAACTTCTAATCTTCTACGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGCTGTTGAAGAGTCTGGTTATGATGAGAGACATGCAAAGGAGATTGAGAGAGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATCGGCTCAGCTCTGCGGTGAACGTTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTACAAAATTGATGGTTATATACCAAAAGTTAGATGGCTTCAGGAGCTCAGGTTCCTTCATCTCACAGCAGTGTTATCCTTTTTTGCTTTTTCAAAATTACATGGAGTATACCTGGAGGTGCTCATAAAAATGATCTGTTATCACGAGCGTGCACTCTATTACATAGGCAAAGCAATCGAAGGAGCTGCTCGTATTTCTTTTAATGCTTTTACTTAG 5517 0.441 MELPECPVCLQSFDDRDAVPRVLPCGHSVCEACLAEFPQRYPNTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLCLQHSPSSQKPNQRSTINACYDHAPFWSPEFYAAWKDWILPHDAVSVDDKGFGLFGSSPKGRVCFGVNRSVSLVPIVCFPPGDHSKFRFSYVARVIKCLEGMNEVAREELALILEASVRQGRMCRVYGLWSEGVEGPLYMVCERQCGNLLDKFGELGNGFVGGNEGGLKLDAGGVFSFLMIGKGLCEALLALHLEGLVAGCLGLSCFSFDELGGICVDLNEALVMRKKFVNAVSRIHEEEAVWEDCLENEFFVSPEVLYELLHKRVATLDSGHSRVPIGYGSDVWSLACVLLRLLIGNALPRNTLEMNGENGSDISASYMCWVEKVSSVLEDKLGSEYLSLRQTLCKCLDVNPGNRPDVVDVRKCIQEMLVKPQFDILGNLEVTISGNSSGHCLVLGELCLLPKERSNELSEHELKEKEIGSQPNFVQDVKDKSDEDFAAGLSKGMTELKDLRGHLDCISGLAVGGGYLLSSSFDKTVHVWSLQDFSHLHTFRGHENKVMALVYVDEEEPLCISGDSGGGMFIWGMAAPLRQDPLRKWYEKKDWRFSGIHSLAVSRNHSLYTGSGDRTIKAWSYKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTIRLWSLNDHSPLTVLGEDTPAEMKPILAITVDRHLLVAAYENGCIKVWRNDVFMNSKTLHNGAIFAMSMHGKCLYTGGRDKNVNIQELSGDEFELDVKAYGSIPCSSVVTAILCNQGKLYVGYADKSIKENLGGVQKRFTDFTSLNYWVVRDYYRLVSSVNAFEPQIQALSDEHLAAKTPEFRRRLERGATLADIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNSEERRFNYRCDITYTNNSELGFDYLRDNLAGTREQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLIQGIHYKAELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFRMPVIEVPTNLPNVRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLSGLLREWNIPHNVLNARPKYAAKEAEIVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTQEDPNAELADESISQKVLQKIKVGSSSMALLAKTALMAKYVSKSEGKSWTYQKAKSFILEAVEMSLSYSLEELEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLLEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFSNIDPLKHPRSWGLSKLLKEFVTVGGKLLQESFGVISDDTLLNSLGLLNDLSSVDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICNDDLIGNGKYQTTSNLLRKYLGDFLIASYLNAVEESGYDERHAKEIERAVLLQTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGYIPKVRWLQELRFLHLTAVLSFFAFSKLHGVYLEVLIKMICYHERALYYIGKAIEGAARISFNAFT 1838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01092 1838 Gene3D - 1215 1521 IPR027417 -
Cca03g01092 1838 Gene3D Helical scaffold and wing domains of SecA 1658 1775 - -
Cca03g01092 1838 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 565 IPR001680 GO:0005515
Cca03g01092 1838 PRINTS SecA protein signature 1211 1224 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 PRINTS SecA protein signature 1174 1191 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 PRINTS SecA protein signature 877 901 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 PRINTS SecA protein signature 915 929 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 PRINTS SecA protein signature 931 941 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 PRINTS SecA protein signature 984 1004 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 PRINTS SecA protein signature 1137 1159 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 CDD DEXDc_SecA 857 1212 - -
Cca03g01092 1838 SUPERFAMILY Pre-protein crosslinking domain of SecA 1044 1165 IPR036670 GO:0016020|GO:0017038
Cca03g01092 1838 SUPERFAMILY WD40 repeat-like 520 811 IPR036322 GO:0005515
Cca03g01092 1838 SMART ring_2 6 50 IPR001841 -
Cca03g01092 1838 CDD SF2_C_secA 1218 1489 IPR044722 -
Cca03g01092 1838 Hamap Protein translocase subunit SecA [secA]. 809 1797 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 Gene3D - 516 607 IPR015943 GO:0005515
Cca03g01092 1838 PRINTS G protein beta WD-40 repeat signature 634 648 IPR020472 -
Cca03g01092 1838 PRINTS G protein beta WD-40 repeat signature 543 557 IPR020472 -
Cca03g01092 1838 PRINTS G protein beta WD-40 repeat signature 674 688 IPR020472 -
Cca03g01092 1838 Gene3D - 836 1213 IPR027417 -
Cca03g01092 1838 ProSiteProfiles Trp-Asp (WD) repeats profile. 657 696 IPR001680 GO:0005515
Cca03g01092 1838 Gene3D - 1046 1166 - -
Cca03g01092 1838 Pfam SecA DEAD-like domain 831 1199 IPR011115 GO:0005524|GO:0016020|GO:0017038
Cca03g01092 1838 Gene3D - 608 812 IPR015943 GO:0005515
Cca03g01092 1838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1215 1502 IPR027417 -
Cca03g01092 1838 ProSiteProfiles Protein kinase domain profile. 118 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01092 1838 Pfam SecA Wing and Scaffold domain 1519 1773 IPR011116 GO:0016020|GO:0017038
Cca03g01092 1838 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 812 1795 - -
Cca03g01092 1838 SUPERFAMILY Protein kinase-like (PK-like) 181 448 IPR011009 -
Cca03g01092 1838 SMART SecA_DEAD_2 821 1200 IPR011115 GO:0005524|GO:0016020|GO:0017038
Cca03g01092 1838 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 812 1795 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 657 689 - -
Cca03g01092 1838 Pfam WD domain, G-beta repeat 654 687 IPR001680 GO:0005515
Cca03g01092 1838 Pfam WD domain, G-beta repeat 522 556 IPR001680 GO:0005515
Cca03g01092 1838 SUPERFAMILY Helical scaffold and wing domains of SecA 1525 1774 IPR036266 -
Cca03g01092 1838 SUPERFAMILY RING/U-box 5 59 - -
Cca03g01092 1838 TIGRFAM secA: preprotein translocase, SecA subunit 842 1613 IPR000185 GO:0005524|GO:0006605|GO:0006886
Cca03g01092 1838 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Cca03g01092 1838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Cca03g01092 1838 Gene3D Helical scaffold and wing domains of SecA 1524 1630 - -
Cca03g01092 1838 ProSiteProfiles SecA family profile. 817 1521 IPR014018 -
Cca03g01092 1838 SMART WD40_4 690 731 IPR001680 GO:0005515
Cca03g01092 1838 SMART WD40_4 519 556 IPR001680 GO:0005515
Cca03g01092 1838 SMART WD40_4 732 769 IPR001680 GO:0005515
Cca03g01092 1838 SMART WD40_4 559 599 IPR001680 GO:0005515
Cca03g01092 1838 SMART WD40_4 605 647 IPR001680 GO:0005515
Cca03g01092 1838 SMART WD40_4 650 687 IPR001680 GO:0005515
Cca03g01092 1838 Pfam RING-type zinc-finger 6 48 IPR027370 -
Cca03g01092 1838 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 903 1066 IPR014001 -
Cca03g01092 1838 Pfam SecA preprotein cross-linking domain 1056 1156 IPR011130 GO:0016020|GO:0017038
Cca03g01092 1838 SMART serkin_6 135 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01092 1838 SMART SecA_PP_bind_2 1045 1156 IPR011130 GO:0016020|GO:0017038
Cca03g01092 1838 Gene3D Transferase(Phosphotransferase) domain 1 252 451 - -
Cca03g01092 1838 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Cca03g01092 1838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 1213 IPR027417 -
Cca03g01092 1838 CDD RING-HC_TRIM32_C-VII 5 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01092 Cca-Chr3 26584049 26618625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01092 521 784 Acyl Lipid Metabolism Gene Families AT3G18860 28.269 3.91e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01092 K03070 - gmx:100793437 3197.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01092 03 26584049 26618625 Cca03g01092 03 26584049 26618625 ECH