Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01078 ATGGCATACTTGCAGGAAATACATGAGAAACAAAGAGCTCGTGGTCCAGCCACCATACTAGCCATTGGTACCGCAAATCCACCCAACTACATTTACCAATCTCACTTTTCCGATTACTTCTTCGGAATGACCAAGAGCCAACACATGACTCAACTTAAGGCCAAGTTCGATCGCATATGTGCGAATTCGATGATAAAGAAACGTCACATGCACCTGAGCGAAGAAATGTTGAAAGAAAACTCCACTATAAGCACTTATAAGGAACCATCCTTGGATTCTTGCCAAGACATACTAGTTGAGGAGGTTCCAAAGCTTGGCGAGAAGGCAGCATCAAAAGCCATCAAGGAATGGGGCAGACCCAAGTCAGATATCACTCACCTCATATTTTGCTCCATGGCAGGTGTAGACATGCCTGGTGCGGATTATCAACTTGTGAAGCTCTTAGGTCTCAAGCCATCCATCAAAAGGTTCATGTTATACCATCAAGGTTGCTTTGCTGGTGGAACTGTGCTTCGTCTCGCTAAAGACCTTGCTGAGAACAATGCTGGAGCACGCGTTCTGGTGGTATGTTCTGAGATTGTAGTCAGCACATTTCGTGGACCCTCAGAAAAACACTTGGACATGTTGGTGGGACAAGCTCTCTTTGGTGATGGTGCCTCATCCGTGATCGTTGGATCCGACCCTGACACGTCCATTGAGCAACCACTGTTTCACCTTGTTTCGGCATCACAAACAATTCTACCCAACACTGAGGGTGCAATTGAGGGACACTTGCGAGAACTGGGACTCACATTAAGTCTCAAGAAAAATGTTCCTCAGATGATCGCAGAGAACATAGGAAAAAGCCTCGAAGAAACCTTTCAACCACTTGGAATTAGTGATTGGAACTCGTTGTTTTGGGTAACCCACCCCGGTGGCCCTACAATCTTGAAGGAAATAGAGGCAACACTTGGGTTAAACGCTGATAAAATGAGAGCATCTAAACATGTCCTAAGTGAGTACGGAAACATGTCAAGTGCTTGTGTCTTCTTTATACTAGACGAGATGAGAAGGTGGTCCATTAAGGAAGGAAAATCCACCACTGGTGAAGGACTACAGTGGGGTGTTTTATATGGGTTTGGCCCTGGATTGACCATGGAGACCATTGTTTTGCATAGCACTGCCTTAGACTCAGGCCACTATAGCTAG 1188 0.4562 MAYLQEIHEKQRARGPATILAIGTANPPNYIYQSHFSDYFFGMTKSQHMTQLKAKFDRICANSMIKKRHMHLSEEMLKENSTISTYKEPSLDSCQDILVEEVPKLGEKAASKAIKEWGRPKSDITHLIFCSMAGVDMPGADYQLVKLLGLKPSIKRFMLYHQGCFAGGTVLRLAKDLAENNAGARVLVVCSEIVVSTFRGPSEKHLDMLVGQALFGDGASSVIVGSDPDTSIEQPLFHLVSASQTILPNTEGAIEGHLRELGLTLSLKKNVPQMIAENIGKSLEETFQPLGISDWNSLFWVTHPGGPTILKEIEATLGLNADKMRASKHVLSEYGNMSSACVFFILDEMRRWSIKEGKSTTGEGLQWGVLYGFGPGLTMETIVLHSTALDSGHYS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01078 395 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 389 IPR011141 GO:0009058|GO:0016747
Cca03g01078 395 PANTHER CHALCONE SYNTHASE 2 4 389 - -
Cca03g01078 395 CDD CHS_like 16 384 - -
Cca03g01078 395 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Cca03g01078 395 Gene3D - 236 387 IPR016039 GO:0016746
Cca03g01078 395 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Cca03g01078 395 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Cca03g01078 395 Gene3D - 1 235 IPR016039 GO:0016746
Cca03g01078 395 Pfam Chalcone and stilbene synthases, C-terminal domain 239 387 IPR012328 -
Cca03g01078 395 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Cca03g01078 395 Pfam Chalcone and stilbene synthases, N-terminal domain 6 228 IPR001099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01078 Cca-Chr3 26336634 26339204 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01078 K00660 - vvi:100263443 578.941