Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01062 ATGGGTGTGAGTGCCGCTTCCATACTGAACGAGCTTCTCCACAAGCAAAACCTAAAAGCAGAGGCAAAGAACGGAACCAAAGCAGCCATCAAAACAATCCTCACTTACCTCAAAGCGGGTCGCATCCGAAAAGCCACTTCCATTCTCTTCGCATTCCCCGAACCCTTCCCATACCCTCTCTACGCCCTCTTCTTCCGCCTCTGCTCCTCCCACCGCGCCCTCGTCCAGGCCCGCAAGGTCGAGTCCCACTTGCTCACCTTCTCCCCCAACCCCCCCACCTTCCTCCTCAACCGCGCCATCGAAGCCTACGCCAAATGCCGCTCTCTCCGCGACGCCCGCGAACTGTTCGACGAAATGCCCCACCGAGATGGCGGCACTTGCAACGCCCTCATCACTGCTTATTCCCAATTGGGTTTCCCCCACCACGCTTTTTCCGTCTTCGTGTCCATGAATAGGTCTGGTGTTTCCCCCAACGAGGTCACTTTCGCCGGCGTTCTCGCCTCTTGTGCTTCTGCTTCCCAGCTTCTTCTCTCCAAGCAGGTTCATGGGCTGCTCGCAAAATTTGGTTTTTGCGGTAATGTGATACTCGGGAGTTCTCTCGTGGATGTTTACGCCAAGTGTGGGGTCATGCTTGATGCCCGCAGGATGTTTCATGAGATTCCGAAGCCCAATGCTGTCACTTGGAATGTCATTGTGAGGAGGTATCTTGATGCTGGTGATGCCAAAGAGGCGGTTTTTATGTTCTCGCGGATGTTTTCGGCTGCGGCCGTTAGGCCCATGAACTTTACTTTTTCTAATGCTCTTGTGGCTTGTTCTACTGTGTCTGCTCTCCCGGAGGGGATGCAGATTCATGGGGTGGTTGTGAAGTTGGGTCTCCAGGAGGATAATGTGGTTTCGAGCTCGCTTGTGAACTTGTATGTCAAGTGTGGTAGGGTGGAAGATGGTTATCGGGTTTTTGATCAGCTTGGTTTTAGAGATTTGGTGTGTTGGACTTCCATTGTGTCGGGGTATGCGATGTGTGGGAAGACTTTCGAGGCGAGGAAGCTTTTTGATGAGATGCCTGAACGGAATGTGATCTCGTGGAATGCCATGTTGGCGGGATATACTCGGTGCTTTGAGTGGTCTGAGGCGTTGGATTTTGTGTATCTCATGCTTGGTATGATTAAGGATGTTGATCATGTCACTCTTGGTTTGATGTTGAATGTTTCGGCTGGTGTTTCGGATCATGAAATGGGGAAACAGCTTCATGGATATATCTATCGACATGGCTTCCATTTGGACGTTAGGCTCAGCAATGCTGTTCTTGACATGTATGGTAAATGTGGGAACTTGAACAGCGCCAGGGTTTGGTTTAACCAGATGAGTAATTGGCGTGACAAGGTTTCTTGGAATGCTTTGTTGGCTAGCTATGGTCATCACCAATTGAGTGAACAAGCATTATCAATGTTTTCTGAGATGCAGTGGGAGACAAAACCAACCAAGTATACATTTGGAACCCTTTTGTTAGCAAGTGCAAATACCTTTGCTCTGTACCTTGGCAAACAAATTCATGGATTCATCATTAGACATGGATTTCAGATAGACACTATAATCAGAACTGCTTTGGTTTACATGTACTGTAAATGCCGTTGTCTTGAATACGCTATTGAGGTTTTGAAGGAGGCAGTTTCCAGGGATGTGATAATTTGGAATACCATAATTTTGGGATGTTGTCACAATCATAGGGGTAAAGAAGCGCTTGAACTTTTTGCGACAATGGAAGCAGAAGGCGTCAAGCCAGACCATGTGACGTTTAAGGGAATTTTGCTTGCTTGCGTTGAAGAAGGCCTTGTTGAGTTTGGCACCGAATTCTTTAAGTCAATGAGCAGTGAATACCATGTCCTGCCTCGGCTGGAACATTATGATTGCATGATCGAACTCTACAGTCAGCATGGATGCATGGATGAGCTTGAGAATTTTATGAGGACAATGACAATTGAGCCCACACTTCCAATGTTGAAAAGAGTTCTTGATGCTTGGAGGGAAGCTGATCTTTATTTCATCATAAAGGCCACAAATCAGATGGAAAATTTATGCAATGGAATATCACTATGA 2094 0.4742 MGVSAASILNELLHKQNLKAEAKNGTKAAIKTILTYLKAGRIRKATSILFAFPEPFPYPLYALFFRLCSSHRALVQARKVESHLLTFSPNPPTFLLNRAIEAYAKCRSLRDARELFDEMPHRDGGTCNALITAYSQLGFPHHAFSVFVSMNRSGVSPNEVTFAGVLASCASASQLLLSKQVHGLLAKFGFCGNVILGSSLVDVYAKCGVMLDARRMFHEIPKPNAVTWNVIVRRYLDAGDAKEAVFMFSRMFSAAAVRPMNFTFSNALVACSTVSALPEGMQIHGVVVKLGLQEDNVVSSSLVNLYVKCGRVEDGYRVFDQLGFRDLVCWTSIVSGYAMCGKTFEARKLFDEMPERNVISWNAMLAGYTRCFEWSEALDFVYLMLGMIKDVDHVTLGLMLNVSAGVSDHEMGKQLHGYIYRHGFHLDVRLSNAVLDMYGKCGNLNSARVWFNQMSNWRDKVSWNALLASYGHHQLSEQALSMFSEMQWETKPTKYTFGTLLLASANTFALYLGKQIHGFIIRHGFQIDTIIRTALVYMYCKCRCLEYAIEVLKEAVSRDVIIWNTIILGCCHNHRGKEALELFATMEAEGVKPDHVTFKGILLACVEEGLVEFGTEFFKSMSSEYHVLPRLEHYDCMIELYSQHGCMDELENFMRTMTIEPTLPMLKRVLDAWREADLYFIIKATNQMENLCNGISL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01062 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 481 - -
Cca03g01062 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 481 - -
Cca03g01062 697 Gene3D Tetratricopeptide repeat domain 412 511 IPR011990 GO:0005515
Cca03g01062 697 Gene3D Tetratricopeptide repeat domain 612 689 IPR011990 GO:0005515
Cca03g01062 697 Gene3D Tetratricopeptide repeat domain 325 411 IPR011990 GO:0005515
Cca03g01062 697 Gene3D Tetratricopeptide repeat domain 512 611 IPR011990 GO:0005515
Cca03g01062 697 Gene3D Tetratricopeptide repeat domain 58 179 IPR011990 GO:0005515
Cca03g01062 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Cca03g01062 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Cca03g01062 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 495 566 - -
Cca03g01062 697 TIGRFAM PPR: pentatricopeptide repeat domain 562 594 IPR002885 -
Cca03g01062 697 TIGRFAM PPR: pentatricopeptide repeat domain 126 159 IPR002885 -
Cca03g01062 697 TIGRFAM PPR: pentatricopeptide repeat domain 461 487 IPR002885 -
Cca03g01062 697 TIGRFAM PPR: pentatricopeptide repeat domain 328 358 IPR002885 -
Cca03g01062 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 564 675 - -
Cca03g01062 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 495 566 - -
Cca03g01062 697 Gene3D Tetratricopeptide repeat domain 180 324 IPR011990 GO:0005515
Cca03g01062 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Cca03g01062 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Cca03g01062 697 Pfam PPR repeat family 459 501 IPR002885 -
Cca03g01062 697 Pfam PPR repeat family 126 170 IPR002885 -
Cca03g01062 697 Pfam PPR repeat family 558 605 IPR002885 -
Cca03g01062 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 564 675 - -
Cca03g01062 697 Pfam PPR repeat 328 358 IPR002885 -
Cca03g01062 697 Pfam PPR repeat 633 657 IPR002885 -
Cca03g01062 697 Pfam PPR repeat 99 121 IPR002885 -
Cca03g01062 697 Pfam PPR repeat 198 220 IPR002885 -
Cca03g01062 697 Pfam PPR repeat 226 252 IPR002885 -
Cca03g01062 697 Pfam PPR repeat 359 385 IPR002885 -
Cca03g01062 697 Pfam PPR repeat 300 321 IPR002885 -
Cca03g01062 697 Pfam PPR repeat 432 455 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01062 Cca-Chr3 25804789 25806987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01062 19 674 Glycoside Hydrolase AT3G49170 27.952 1.29e-78 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01062 - - gmx:100775626 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01062 03 25804789 25806987 Cca03g01062 03 25804789 25806987 ECH