Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01061 ATGGAATTGCATGGCTTGGCACGCACGATTCAATCCTGGTCCTCGATTCGCGAAGGGAGACAACTCCACGTGGCATTCCTCAAAACCGGTATTCTTCACTCCTCCGTCAGCGTGGCAAACCGGCTCCTCCAGTTGTACTCTCGCTGCGACCATCTCCGCGATGCGTCCCACCTGTTCGACGAAATGCCCCAAACAAACCCTTTCTCCTGGAACACCCTCATCCAAGCCCACCTCAACTCAGGCCACACCCACATGTCTCTCCACTTGTTCAACGCCATGCCTCACAAGACCCACTTCTCATGGAACATGGTCGTTTCCGCTTTTGCCAAGTCCGGACACCTCCAACTGGCTCACTCTCTCTTCAATGCCATGCCCTCAAAGAACAACCTCGTATGGAATTCCATCATTCATGGTTATTCCCGACACGGGAATCCTCTTCAAGCGCTATTACTCTTCAAAAGCATGAACTCAGACCCTTCACAGATAATGTACCGTGATGCCTTTGTGCTGGCAACTGTTCTTGGTGCTTGCGCTGACTTGTTGGCTCTCAACTGTGGGAAACAAGTCCATGCGCGTGTTTTCATCGATGGTTTCGCGTTGGAGCTTGACAGGGTCTTGTGCAGCTCGCTGATTAACTTGTATGGAAAGTGTGGTGATTTGGATAGTGCTGCTCGTGTTGTGAGTCTTGTGAGGGAAGTTGATGAGTTCTCTTTGTCAGCTTTGATATCTGGTTATGCAAATGCAGGGAGAATGAGGGAGGCCAGAAGGGTTTTTGATAGTATGGTTGGTCCGTGTGCTGTGATGTGGAATTCGGTTATTTCGGGTTATGTGTCCAACGGTGAGGAGATGGAGGCGGTGAGGCTTTTCGGTACAATGCTTAGGAATGGTGTTCGGGGAGATGTCTCCACTGTTGCTAATGTTTTGAGTGCTTGCAGTGGCTTACAGGTTGTTGAACTTGTTAAGCAAATGCATGCCTATGCTTGTAAAGCTGGGGTGACTTGTGATATAGTGGTTGCTAGTGCTCTGCTTGATGCCTACTACAAATGTCAAAGCCCTTGTGAAGCTTGCAAGTTTTTTAGCGAGCTCGAAGATTACGATACGATTTTGCTTAATACTATGATCACTGTGTATTCTAATTGCGGAAGGATTGCAGATGCGAAATGGATTTTTAACAGAATGCCTAGTAAAACCTTGATTTCATGGAATTCAATACTAGTTGGCCTAACCCAGAATGCTTGTCCAAGCGAAGCGTTGGATATTTTTTGTCAGATGAATAGGTTGGATATAAAAATGGACAGGTATAGCTTTGCCAGTGTAATCAGTGCTTGTGCCAGCAAATCAGCTCTTGAACTTGGGCGTAAAGTTTTTGATGGACTGGTAAAAACTGATGAAGTGTCGTGGAACACAATGTTGATTGGGTATGCCACAAATGGATATGGAATTGAAGCTCTAACACTCTTCAGTGAAATGAGGTATAGTGGTGTCAGGCCTTCTGCCATTACTTTTACTGCGGTTCTTTCCGCCTGTGATCATAGTGGTCTGGTTGAAGAAGGAAGAAGTTTGTTCCATACAATGAAACATACCTATAACATGAATCCAGGGATTGAACATTACTCTTGCATGGTTGACCTTTTTGCCCGAGCTGGATGCTTCGAGGAAGCACTGGATCTTATTGAAGAGTTGCCTTTTCAGGCTGATGCCAACATGTGGTTGTCAGTATTGAGAGGCTGCATAGCTCATGGAAATAAGACTATTGGCAAGATGGCTGCAGAGCAAATCATTCAGCTTGATCCTGAAAATGCAGGTGCTTATATACAATTATCTAACATACTTGCATCTTCTGGGGACTGGGAAGGGTCAGCACTAGTAAGAGAACTGATGAGAGGTAACCAAGTTCAGAAGATTCCTGGTTGTAGTTGGGCAGATTGTTGA 1932 0.4586 MELHGLARTIQSWSSIREGRQLHVAFLKTGILHSSVSVANRLLQLYSRCDHLRDASHLFDEMPQTNPFSWNTLIQAHLNSGHTHMSLHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMPSKNNLVWNSIIHGYSRHGNPLQALLLFKSMNSDPSQIMYRDAFVLATVLGACADLLALNCGKQVHARVFIDGFALELDRVLCSSLINLYGKCGDLDSAARVVSLVREVDEFSLSALISGYANAGRMREARRVFDSMVGPCAVMWNSVISGYVSNGEEMEAVRLFGTMLRNGVRGDVSTVANVLSACSGLQVVELVKQMHAYACKAGVTCDIVVASALLDAYYKCQSPCEACKFFSELEDYDTILLNTMITVYSNCGRIADAKWIFNRMPSKTLISWNSILVGLTQNACPSEALDIFCQMNRLDIKMDRYSFASVISACASKSALELGRKVFDGLVKTDEVSWNTMLIGYATNGYGIEALTLFSEMRYSGVRPSAITFTAVLSACDHSGLVEEGRSLFHTMKHTYNMNPGIEHYSCMVDLFARAGCFEEALDLIEELPFQADANMWLSVLRGCIAHGNKTIGKMAAEQIIQLDPENAGAYIQLSNILASSGDWEGSALVRELMRGNQVQKIPGCSWADC 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01061 643 PANTHER OS03G0849700 PROTEIN 165 452 - -
Cca03g01061 643 PANTHER OS03G0849700 PROTEIN 105 157 - -
Cca03g01061 643 PANTHER OS03G0849700 PROTEIN 8 98 - -
Cca03g01061 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Cca03g01061 643 Pfam E motif 580 640 IPR046848 -
Cca03g01061 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 127 IPR002885 -
Cca03g01061 643 TIGRFAM PPR: pentatricopeptide repeat domain 237 262 IPR002885 -
Cca03g01061 643 TIGRFAM PPR: pentatricopeptide repeat domain 465 498 IPR002885 -
Cca03g01061 643 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Cca03g01061 643 TIGRFAM PPR: pentatricopeptide repeat domain 538 560 IPR002885 -
Cca03g01061 643 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Cca03g01061 643 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Cca03g01061 643 TIGRFAM PPR: pentatricopeptide repeat domain 131 155 IPR002885 -
Cca03g01061 643 PANTHER OS07G0578800 PROTEIN-RELATED 451 643 IPR045215 GO:0003723|GO:0009451
Cca03g01061 643 PANTHER OS07G0578800 PROTEIN-RELATED 165 452 IPR045215 GO:0003723|GO:0009451
Cca03g01061 643 PANTHER OS07G0578800 PROTEIN-RELATED 105 157 IPR045215 GO:0003723|GO:0009451
Cca03g01061 643 PANTHER OS03G0849700 PROTEIN 451 643 - -
Cca03g01061 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 264 IPR002885 -
Cca03g01061 643 Gene3D Tetratricopeptide repeat domain 335 450 IPR011990 GO:0005515
Cca03g01061 643 Gene3D Tetratricopeptide repeat domain 182 315 IPR011990 GO:0005515
Cca03g01061 643 Gene3D Tetratricopeptide repeat domain 460 634 IPR011990 GO:0005515
Cca03g01061 643 Pfam PPR repeat 40 63 IPR002885 -
Cca03g01061 643 Pfam PPR repeat 206 227 IPR002885 -
Cca03g01061 643 Pfam PPR repeat 131 157 IPR002885 -
Cca03g01061 643 Pfam PPR repeat 237 262 IPR002885 -
Cca03g01061 643 Pfam PPR repeat 371 396 IPR002885 -
Cca03g01061 643 Pfam PPR repeat 68 94 IPR002885 -
Cca03g01061 643 Pfam PPR repeat 99 128 IPR002885 -
Cca03g01061 643 Pfam PPR repeat 537 561 IPR002885 -
Cca03g01061 643 Pfam PPR repeat 399 428 IPR002885 -
Cca03g01061 643 Pfam PPR repeat family 463 509 IPR002885 -
Cca03g01061 643 Pfam PPR repeat family 264 311 IPR002885 -
Cca03g01061 643 Gene3D Tetratricopeptide repeat domain 3 164 IPR011990 GO:0005515
Cca03g01061 643 PANTHER OS07G0578800 PROTEIN-RELATED 8 98 IPR045215 GO:0003723|GO:0009451
Cca03g01061 643 SUPERFAMILY TPR-like 346 619 IPR011990 GO:0005515
Cca03g01061 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Cca03g01061 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Cca03g01061 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01061 Cca-Chr3 25800510 25802861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01061 16 642 Glycoside Hydrolase AT3G49170 26.479 3.17e-78 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01061 - - gmx:100790756 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01061 03 25800510 25802861 Cca03g01061 03 25800510 25802861 ECH