Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01060 ATGTACCCATTTTTGAAGCAAACGCGAATTCCTCACTCATCGTCTCTTTCTTATTGCTCTCATCTTCTAGACCACTGTTTATCTCAAAAATCAATTAACTTTGTCAAAATCGTGCATGCTCATTTCCTCAAATTGGGTCTTAACACCTACACCTACTTGGGTAACCGCTGTCTCGACCTTTACTCTGAGTTGGGCCACATTAACGATGCATTGAAGGTGTTTGATGATATTTCTCACAAGAACTCTACTTCCTGGAACATTTGCTTAAAAGGGTTGCTCAAAAGTGGCCAGCTTGGCAAGGCCTGCCACGTGTTTGATGCAATACCTGTTAGAGATGTCGTAACTTGGAACTCCATGATTTCGGGTTATGCTTCTTGTGGGTTTTTCAGTCATGCCTTGGAGCTTTTTGTTGAAATGCAAGGTACTGGTGTGAGACCAAGTGGGTTCACACTCTCCATTTTGATGTCACTCGTGTCAAGTCCCTGTCATGCTAAACAGATTCACTGTAGGATAATCAGAAGTGGGGTGGGTTTGGATAATGTAGTACTTGGGAATTCGTTAATAACTATGTATGGGAAGCTTGGTCTAGTTGAATATTCTTTTGGTGTGATTATGACTATGAATCAGTTTGATGTTATATCTTGGAACTCTTTAATCTGGGCCTGTCATAGATCTGGATACCATGAGCTTGCTTTAGAGCAGTTCTATCAGATGAGAGGTTCGGAATTGTTTCCTGACCAATTTACCTGTTCCATGTTGATGAGTGTCTGTTCTAACTTGCGTGACTTGGACAAGGATTGGAGGACTCTGCATGATTTAGCGGAAGATGCTTTGCAACTGTTTGTGCTTACCTTGAGGAAGAACATCAGACCTACAGAATACACGATTAGCTCTCTTCTGAGTTCTGTTTCGATTTTCTTGCCAGTTGAGGTGGGTAATCAAATCCATTCGTTGGTTCCTAAATTGGGTTTCGAGTCAGAATCAGTTGTTGCCAATTCACTTGTTGATATGTATGCTAAATTTGGGTTTATTGATGATGCCTTGAGTATCTTCAATGAAGTGAAAATAAAAGATTTGGTATCATGGAACACTATAATGATGGGACTGACTTCCAATGGCAGAGTCTCTTTGACCATGGACCTCTTCAGGGAATTATTGAATAGAGAAGGCATGCTACCGGATCGAATAACACTCACTGCAGTTCTACTAGCATGCAACTATGGGAGGTTGGTTGATGAAGGAATTGAAATATTTTCCTCAATGGAGATGAAATTTGGAGTGAAACCAGGAGAAGAACATTATGCATGTGTTGTGGAGATGTTGAGTAAAGATGGTAAACTCAAAGAAGCCATTGATATCATAGAAACAATGCCATATAGAACTACCTCTGACATTTGGAGGTCAATTCTTTCAGCATGTGCAATTTATGGAGACTTGCAAGTTGTTGAAGGAGTTGCAAAGAAAATAATGGATAGGGAATCACAGACTTACTTACCTTACTTGGTGCTGGCTCAAGCATATCAGATTAGGGGTAGATGGGAGACCATGGTTCGAATGAGGAAGGCTGTAGAAAATAGAGGTACTAAAGAGTTCATTGGACACAGTTGGATTGGAATAAAAAATAATGTGTACACTTTCGCGTCAAATCAATTGCAGCATTATGGTGGCAAGGATCTTTATCTGTTGTTGAATTTACTGGTCTGGGAGATGGAGAGTGAAGGTTATGCCTAA 1731 0.4038 MYPFLKQTRIPHSSSLSYCSHLLDHCLSQKSINFVKIVHAHFLKLGLNTYTYLGNRCLDLYSELGHINDALKVFDDISHKNSTSWNICLKGLLKSGQLGKACHVFDAIPVRDVVTWNSMISGYASCGFFSHALELFVEMQGTGVRPSGFTLSILMSLVSSPCHAKQIHCRIIRSGVGLDNVVLGNSLITMYGKLGLVEYSFGVIMTMNQFDVISWNSLIWACHRSGYHELALEQFYQMRGSELFPDQFTCSMLMSVCSNLRDLDKDWRTLHDLAEDALQLFVLTLRKNIRPTEYTISSLLSSVSIFLPVEVGNQIHSLVPKLGFESESVVANSLVDMYAKFGFIDDALSIFNEVKIKDLVSWNTIMMGLTSNGRVSLTMDLFRELLNREGMLPDRITLTAVLLACNYGRLVDEGIEIFSSMEMKFGVKPGEEHYACVVEMLSKDGKLKEAIDIIETMPYRTTSDIWRSILSACAIYGDLQVVEGVAKKIMDRESQTYLPYLVLAQAYQIRGRWETMVRMRKAVENRGTKEFIGHSWIGIKNNVYTFASNQLQHYGGKDLYLLLNLLVWEMESEGYA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01060 576 Pfam PPR repeat family 111 156 IPR002885 -
Cca03g01060 576 TIGRFAM PPR: pentatricopeptide repeat domain 360 394 IPR002885 -
Cca03g01060 576 TIGRFAM PPR: pentatricopeptide repeat domain 114 147 IPR002885 -
Cca03g01060 576 Gene3D Tetratricopeptide repeat domain 406 553 IPR011990 GO:0005515
Cca03g01060 576 Gene3D Tetratricopeptide repeat domain 160 276 IPR011990 GO:0005515
Cca03g01060 576 PANTHER OS03G0435200 PROTEIN 270 575 - -
Cca03g01060 576 Gene3D Tetratricopeptide repeat domain 14 159 IPR011990 GO:0005515
Cca03g01060 576 Gene3D Tetratricopeptide repeat domain 277 405 IPR011990 GO:0005515
Cca03g01060 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Cca03g01060 576 PANTHER OS03G0435200 PROTEIN 1 265 - -
Cca03g01060 576 PANTHER OS07G0578800 PROTEIN-RELATED 1 265 IPR045215 GO:0003723|GO:0009451
Cca03g01060 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 393 IPR002885 -
Cca03g01060 576 Pfam PPR repeat 213 241 IPR002885 -
Cca03g01060 576 Pfam PPR repeat 360 387 IPR002885 -
Cca03g01060 576 Pfam PPR repeat 330 355 IPR002885 -
Cca03g01060 576 Pfam PPR repeat 84 107 IPR002885 -
Cca03g01060 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Cca03g01060 576 PANTHER OS07G0578800 PROTEIN-RELATED 270 575 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01060 Cca-Chr3 25783928 25785823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01060 96 575 Glycoside Hydrolase AT3G49170 27.629 2.01e-60 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01060 - - gmx:102663822 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01060 03 25783928 25785823 Cca03g01060 03 25783928 25785823 ECH