Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01059 ATGGCATCTTGGTTGTTGGGAACGTCTAGGATCTTAACTCATCATAAACACCTTCACAAAACCCTCCCctccttcttcttagcttcttcttcttcACCCTTCTCACGTCATGAATCCACCAAAGCTCAGGCACAATTGGAAATATTGGACCATGATGTCACCGGCGATTACTCTACTCAGGTGATTGATTTTCCAGGAGGAAAAGTTGGATTTACTTCTGAAATGAAATTTATTTCCGAGTCTGCTCAGAAAAGGGTGCCCTGTTATCGTGTTCTTGATGATAATGGCCAGCTCCTTCAATACAGCAACTATGTACAGATTAGCAAGGAAATTGCTGTGAAGATGTATTCTGACATGGTCACTCTTCAAACTATGGACAGCGTACTCTATGAAGTGCAGAGGCAAGGTAGAATTTCCTTCTACCTCACCTCAATGGGGGAAGAAGTAGTTAACATTGCATCCGCAGCTGCACTTTCTCCTGATGATGTCATATTGCCTCAGTACCGGGAACCTGGAGTTCTATTGTGGCGTGGTTTTACACTGCAACAATTTGTTCATCAATGCTTTGGAAACACACATGATTTTGGGAAAGGCAGGCAAATGCCTATACATTATGGCTCTAACAAGCTCAATTACTTCACAGTGTCATCCCCCATTGCAACACAACTTCCTCAAGCTGTAGGCGCTGCTTATTCCCTTAAAATGGATGGGAAAAGTGCATGTGCTGTCACTTATTGTGGGGATGGTAGTACCAGTGAGGGAGATTTTCATGCAGCTATGAATTTTGCAGCAGTAATGGATGCCCCTGTTGTTTTCATCTGTCGTAACAATGGATGGGCCATTAGCACACCTGTAGAAGAACAATTTCGAAGTGATGGCATTGTAGTCAAATGTAAAGCTTATGGCACCTGGGGTATCAGAGTAGACGGAAATGATGCTCTTGCTGTTTATAGCGCGGTTCACACTGCTAGAGAAATAGCTATAAGAGAAAAAAGACCAGTTTTAATTGAGGCTCTCACTTATAGAGTAGGACATCACTCTACATCTGATGATTCAACTAAGTACCGGCCAATTGATGAGATTGAATATTGGAAGATGGAAAGGAATCCTGTGAATAGATTCAAAAGATGGGTAGAAGGGAATGGTTGGTGGAGTGACAAAGATGAATTGGAGCTTAGAAGCGGTATTAGGAAGCAGCTAGTGCAAGCGATTCAGGTGGCAGAGAAAGCACAAAAGCCTCCACTTGAGGACATGTTTAATGATGTCTATGACCAAATACCATCAAACCTTCATGAGCAAGAGAGACTACTTAGAAATACCATCGAGAAGCATCCCAAAGATTATCCTTCTGATGTTCCATTGTAG 1365 0.4168 MASWLLGTSRILTHHKHLHKTLPSFFLASSSSPFSRHESTKAQAQLEILDHDVTGDYSTQVIDFPGGKVGFTSEMKFISESAQKRVPCYRVLDDNGQLLQYSNYVQISKEIAVKMYSDMVTLQTMDSVLYEVQRQGRISFYLTSMGEEVVNIASAAALSPDDVILPQYREPGVLLWRGFTLQQFVHQCFGNTHDFGKGRQMPIHYGSNKLNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTYCGDGSTSEGDFHAAMNFAAVMDAPVVFICRNNGWAISTPVEEQFRSDGIVVKCKAYGTWGIRVDGNDALAVYSAVHTAREIAIREKRPVLIEALTYRVGHHSTSDDSTKYRPIDEIEYWKMERNPVNRFKRWVEGNGWWSDKDELELRSGIRKQLVQAIQVAEKAQKPPLEDMFNDVYDQIPSNLHEQERLLRNTIEKHPKDYPSDVPL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01059 454 Gene3D - 57 452 - -
Cca03g01059 454 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 86 449 IPR029061 -
Cca03g01059 454 CDD TPP_E1_PDC_ADC_BCADC 115 407 - -
Cca03g01059 454 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 34 454 - -
Cca03g01059 454 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 34 454 - -
Cca03g01059 454 Pfam Dehydrogenase E1 component 119 414 IPR001017 GO:0016624
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01059 Cca-Chr3 25739012 25746610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01059 16 292 Acyl Lipid Metabolism Gene Families AT5G09300 69.286 1.13e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01059 K00166 - gmx:100796766 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01059 03 25739012 25746610 Cca03g01059 03 25739012 25746610 ECH